Strain Fitness in Pseudomonas simiae WCS417 around PS417_16080
Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,524,823 | + | PS417_16075 | 0.40 | +0.0 | |
3,524,824 | - | PS417_16075 | 0.40 | +0.0 | |
3,524,824 | - | PS417_16075 | 0.40 | -0.4 | |
3,524,934 | + | PS417_16075 | 0.52 | -0.1 | |
3,525,643 | + | PS417_16080 | 0.26 | +1.4 | |
3,525,779 | - | PS417_16080 | 0.39 | +0.3 | |
3,525,932 | - | PS417_16080 | 0.54 | +0.7 | |
3,526,579 | - | PS417_16085 | 0.20 | +0.3 | |
3,526,771 | - | PS417_16085 | 0.42 | +0.1 | |
3,527,085 | + | PS417_16085 | 0.78 | +0.1 | |
3,527,085 | + | PS417_16085 | 0.78 | -0.3 | |
3,527,085 | + | PS417_16085 | 0.78 | -1.0 | |
3,527,085 | + | PS417_16085 | 0.78 | +0.5 | |
3,527,086 | - | PS417_16085 | 0.78 | +0.1 | |
3,527,089 | - | PS417_16085 | 0.78 | +0.8 |
Or see this region's nucleotide sequence