Strain Fitness in Pseudomonas simiae WCS417 around PS417_15890
Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,478,540 | - | PS417_15880 | 0.83 | +1.1 | |
3,478,560 | + | PS417_15880 | 0.87 | +0.2 | |
3,478,560 | + | PS417_15880 | 0.87 | +0.0 | |
3,478,560 | + | +1.4 | |||
3,478,561 | - | PS417_15880 | 0.87 | +1.7 | |
3,478,561 | - | PS417_15880 | 0.87 | +0.2 | |
3,478,636 | - | -0.6 | |||
3,478,636 | - | +0.4 | |||
3,478,813 | - | PS417_15885 | 0.43 | -0.4 | |
3,478,937 | + | PS417_15885 | 0.73 | -1.3 | |
3,478,967 | + | PS417_15885 | 0.80 | -1.6 | |
3,479,042 | - | -0.4 | |||
3,479,116 | + | -0.2 | |||
3,479,685 | + | PS417_15890 | 0.75 | -0.9 | |
3,479,686 | - | PS417_15890 | 0.75 | -0.1 | |
3,479,751 | - | +0.8 | |||
3,479,751 | - | PS417_15890 | 0.87 | -2.3 | |
3,479,868 | + | +0.7 | |||
3,479,869 | + | +0.6 | |||
3,479,869 | + | -0.3 | |||
3,479,870 | - | +0.1 | |||
3,479,870 | - | +0.5 | |||
3,479,962 | + | PS417_15895 | 0.15 | -1.3 | |
3,479,963 | - | PS417_15895 | 0.16 | +1.2 | |
3,480,110 | - | PS417_15895 | 0.31 | -0.6 | |
3,480,151 | + | PS417_15895 | 0.35 | +0.5 | |
3,480,285 | - | PS417_15895 | 0.49 | +0.3 |
Or see this region's nucleotide sequence