Strain Fitness in Pseudomonas simiae WCS417 around PS417_15890

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15880 and PS417_15885 are separated by 2 nucleotidesPS417_15885 and PS417_15890 are separated by 234 nucleotidesPS417_15890 and PS417_15895 overlap by 4 nucleotides PS417_15880: PS417_15880 - GNAT family acetyltransferase, at 3,478,134 to 3,478,625 _15880 PS417_15885: PS417_15885 - GCN5 family acetyltransferase, at 3,478,628 to 3,479,053 _15885 PS417_15890: PS417_15890 - RNA polymerase sigma factor, at 3,479,288 to 3,479,818 _15890 PS417_15895: PS417_15895 - iron dicitrate transport regulator FecR, at 3,479,815 to 3,480,765 _15895 Position (kb) 3479 3480Strain fitness (log2 ratio) -2 -1 0 1at 3478.540 kb on - strand, within PS417_15880at 3478.560 kb on + strand, within PS417_15880at 3478.560 kb on + strand, within PS417_15880at 3478.560 kb on + strandat 3478.561 kb on - strand, within PS417_15880at 3478.561 kb on - strand, within PS417_15880at 3478.636 kb on - strandat 3478.636 kb on - strandat 3478.813 kb on - strand, within PS417_15885at 3478.937 kb on + strand, within PS417_15885at 3478.967 kb on + strand, within PS417_15885at 3479.042 kb on - strandat 3479.116 kb on + strandat 3479.685 kb on + strand, within PS417_15890at 3479.686 kb on - strand, within PS417_15890at 3479.751 kb on - strandat 3479.751 kb on - strand, within PS417_15890at 3479.868 kb on + strandat 3479.869 kb on + strandat 3479.869 kb on + strandat 3479.870 kb on - strandat 3479.870 kb on - strandat 3479.962 kb on + strand, within PS417_15895at 3479.963 kb on - strand, within PS417_15895at 3480.110 kb on - strand, within PS417_15895at 3480.151 kb on + strand, within PS417_15895at 3480.285 kb on - strand, within PS417_15895

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,478,540 - PS417_15880 0.83 +1.1
3,478,560 + PS417_15880 0.87 +0.2
3,478,560 + PS417_15880 0.87 +0.0
3,478,560 + +1.4
3,478,561 - PS417_15880 0.87 +1.7
3,478,561 - PS417_15880 0.87 +0.2
3,478,636 - -0.6
3,478,636 - +0.4
3,478,813 - PS417_15885 0.43 -0.4
3,478,937 + PS417_15885 0.73 -1.3
3,478,967 + PS417_15885 0.80 -1.6
3,479,042 - -0.4
3,479,116 + -0.2
3,479,685 + PS417_15890 0.75 -0.9
3,479,686 - PS417_15890 0.75 -0.1
3,479,751 - +0.8
3,479,751 - PS417_15890 0.87 -2.3
3,479,868 + +0.7
3,479,869 + +0.6
3,479,869 + -0.3
3,479,870 - +0.1
3,479,870 - +0.5
3,479,962 + PS417_15895 0.15 -1.3
3,479,963 - PS417_15895 0.16 +1.2
3,480,110 - PS417_15895 0.31 -0.6
3,480,151 + PS417_15895 0.35 +0.5
3,480,285 - PS417_15895 0.49 +0.3

Or see this region's nucleotide sequence