Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15810 and PS417_15815 are separated by 125 nucleotides PS417_15815 and PS417_15820 are separated by 36 nucleotides PS417_15820 and PS417_15825 are separated by 319 nucleotides
PS417_15810: PS417_15810 - hypothetical protein, at 3,463,988 to 3,464,317
_15810
PS417_15815: PS417_15815 - hydrolase, at 3,464,443 to 3,464,952
_15815
PS417_15820: PS417_15820 - universal stress protein UspA, at 3,464,989 to 3,465,891
_15820
PS417_15825: PS417_15825 - Crp/Fnr family transcriptional regulator, at 3,466,211 to 3,466,957
_15825
Position (kb)
3464
3465
3466 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3464.141 kb on - strand, within PS417_15810 at 3464.173 kb on - strand, within PS417_15810 at 3464.184 kb on + strand, within PS417_15810 at 3464.217 kb on + strand, within PS417_15810 at 3464.217 kb on + strand at 3464.218 kb on - strand, within PS417_15810 at 3464.231 kb on + strand at 3464.257 kb on - strand, within PS417_15810 at 3464.656 kb on + strand, within PS417_15815 at 3464.656 kb on + strand, within PS417_15815 at 3464.657 kb on - strand, within PS417_15815 at 3464.657 kb on - strand, within PS417_15815 at 3464.657 kb on - strand, within PS417_15815 at 3464.658 kb on + strand, within PS417_15815 at 3464.659 kb on - strand, within PS417_15815 at 3464.950 kb on + strand at 3464.996 kb on - strand at 3465.601 kb on + strand, within PS417_15820 at 3465.702 kb on - strand, within PS417_15820 at 3465.767 kb on + strand, within PS417_15820 at 3465.880 kb on - strand at 3466.016 kb on - strand at 3466.016 kb on - strand at 3466.020 kb on - strand at 3466.151 kb on - strand at 3466.177 kb on + strand at 3466.177 kb on + strand at 3466.374 kb on - strand, within PS417_15825 at 3466.521 kb on + strand, within PS417_15825 at 3466.521 kb on + strand, within PS417_15825 at 3466.522 kb on - strand, within PS417_15825 at 3466.522 kb on - strand, within PS417_15825 at 3466.754 kb on + strand, within PS417_15825 at 3466.805 kb on + strand, within PS417_15825 at 3466.806 kb on - strand, within PS417_15825 at 3466.809 kb on + strand, within PS417_15825 at 3466.809 kb on + strand, within PS417_15825 at 3466.809 kb on + strand, within PS417_15825 at 3466.810 kb on - strand, within PS417_15825 at 3466.810 kb on - strand, within PS417_15825
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,464,141 - PS417_15810 0.46 -0.1 3,464,173 - PS417_15810 0.56 +0.2 3,464,184 + PS417_15810 0.59 -2.4 3,464,217 + PS417_15810 0.69 -0.4 3,464,217 + -0.8 3,464,218 - PS417_15810 0.70 +0.1 3,464,231 + -0.2 3,464,257 - PS417_15810 0.82 +0.0 3,464,656 + PS417_15815 0.42 +0.8 3,464,656 + PS417_15815 0.42 -0.2 3,464,657 - PS417_15815 0.42 -0.3 3,464,657 - PS417_15815 0.42 -0.2 3,464,657 - PS417_15815 0.42 +0.3 3,464,658 + PS417_15815 0.42 +0.6 3,464,659 - PS417_15815 0.42 -0.1 3,464,950 + -0.7 3,464,996 - +0.1 3,465,601 + PS417_15820 0.68 -0.0 3,465,702 - PS417_15820 0.79 +3.5 3,465,767 + PS417_15820 0.86 -0.2 3,465,880 - -0.3 3,466,016 - -0.4 3,466,016 - +0.5 3,466,020 - -1.2 3,466,151 - -0.6 3,466,177 + +0.1 3,466,177 + +0.7 3,466,374 - PS417_15825 0.22 +0.4 3,466,521 + PS417_15825 0.41 -0.3 3,466,521 + PS417_15825 0.41 -0.2 3,466,522 - PS417_15825 0.42 -0.4 3,466,522 - PS417_15825 0.42 -0.4 3,466,754 + PS417_15825 0.73 +0.2 3,466,805 + PS417_15825 0.80 -0.2 3,466,806 - PS417_15825 0.80 -0.3 3,466,809 + PS417_15825 0.80 -0.0 3,466,809 + PS417_15825 0.80 +0.1 3,466,809 + PS417_15825 0.80 -2.5 3,466,810 - PS417_15825 0.80 +0.0 3,466,810 - PS417_15825 0.80 -0.1
Or see this region's nucleotide sequence