Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15575 and PS417_15580 are separated by 109 nucleotides PS417_15580 and PS417_15585 overlap by 4 nucleotides
PS417_15575: PS417_15575 - histidine kinase, at 3,412,786 to 3,414,498
_15575
PS417_15580: PS417_15580 - DNA polymerase, at 3,414,608 to 3,417,679
_15580
PS417_15585: PS417_15585 - DNA repair nucleotidyltransferase, at 3,417,676 to 3,419,088
_15585
Position (kb)
3414
3415
3416
3417
3418 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3413.675 kb on + strand, within PS417_15575 at 3413.676 kb on - strand, within PS417_15575 at 3413.679 kb on + strand, within PS417_15575 at 3413.679 kb on + strand, within PS417_15575 at 3413.679 kb on + strand, within PS417_15575 at 3413.679 kb on + strand, within PS417_15575 at 3413.680 kb on - strand, within PS417_15575 at 3413.680 kb on - strand, within PS417_15575 at 3413.680 kb on - strand, within PS417_15575 at 3414.098 kb on + strand, within PS417_15575 at 3414.098 kb on + strand, within PS417_15575 at 3414.257 kb on + strand, within PS417_15575 at 3414.287 kb on + strand, within PS417_15575 at 3414.288 kb on - strand, within PS417_15575 at 3414.308 kb on + strand, within PS417_15575 at 3414.308 kb on + strand, within PS417_15575 at 3414.309 kb on - strand, within PS417_15575 at 3414.568 kb on + strand at 3414.569 kb on - strand at 3414.569 kb on - strand at 3414.569 kb on - strand at 3414.571 kb on - strand at 3414.571 kb on - strand at 3414.573 kb on - strand at 3414.573 kb on - strand at 3414.573 kb on - strand at 3414.573 kb on - strand at 3414.573 kb on - strand at 3414.573 kb on - strand at 3414.577 kb on + strand at 3415.097 kb on + strand, within PS417_15580 at 3415.097 kb on + strand, within PS417_15580 at 3415.098 kb on - strand, within PS417_15580 at 3415.429 kb on - strand, within PS417_15580 at 3415.812 kb on + strand, within PS417_15580 at 3415.848 kb on + strand, within PS417_15580 at 3415.848 kb on + strand, within PS417_15580 at 3416.011 kb on - strand, within PS417_15580 at 3416.529 kb on + strand, within PS417_15580 at 3416.530 kb on - strand, within PS417_15580 at 3416.664 kb on + strand, within PS417_15580 at 3416.664 kb on + strand, within PS417_15580 at 3416.749 kb on + strand, within PS417_15580 at 3417.078 kb on - strand, within PS417_15580 at 3417.672 kb on + strand at 3417.767 kb on + strand at 3417.767 kb on + strand at 3418.631 kb on + strand, within PS417_15585 at 3418.636 kb on - strand, within PS417_15585
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,413,675 + PS417_15575 0.52 +0.3 3,413,676 - PS417_15575 0.52 +0.2 3,413,679 + PS417_15575 0.52 +1.2 3,413,679 + PS417_15575 0.52 -0.2 3,413,679 + PS417_15575 0.52 +0.6 3,413,679 + PS417_15575 0.52 +0.7 3,413,680 - PS417_15575 0.52 +2.9 3,413,680 - PS417_15575 0.52 +0.0 3,413,680 - PS417_15575 0.52 +2.0 3,414,098 + PS417_15575 0.77 -0.1 3,414,098 + PS417_15575 0.77 -0.0 3,414,257 + PS417_15575 0.86 +0.6 3,414,287 + PS417_15575 0.88 -0.7 3,414,288 - PS417_15575 0.88 -0.3 3,414,308 + PS417_15575 0.89 -2.0 3,414,308 + PS417_15575 0.89 -0.0 3,414,309 - PS417_15575 0.89 +0.4 3,414,568 + -0.3 3,414,569 - -0.2 3,414,569 - +0.8 3,414,569 - +0.6 3,414,571 - -1.0 3,414,571 - -0.2 3,414,573 - -0.3 3,414,573 - -0.7 3,414,573 - -0.1 3,414,573 - +0.8 3,414,573 - +1.0 3,414,573 - +1.1 3,414,577 + +0.1 3,415,097 + PS417_15580 0.16 -2.2 3,415,097 + PS417_15580 0.16 -0.3 3,415,098 - PS417_15580 0.16 -0.2 3,415,429 - PS417_15580 0.27 -0.5 3,415,812 + PS417_15580 0.39 -0.3 3,415,848 + PS417_15580 0.40 +0.5 3,415,848 + PS417_15580 0.40 +0.3 3,416,011 - PS417_15580 0.46 -0.1 3,416,529 + PS417_15580 0.63 +0.5 3,416,530 - PS417_15580 0.63 +0.7 3,416,664 + PS417_15580 0.67 +0.3 3,416,664 + PS417_15580 0.67 +0.1 3,416,749 + PS417_15580 0.70 +2.0 3,417,078 - PS417_15580 0.80 -0.6 3,417,672 + -0.0 3,417,767 + +0.8 3,417,767 + -0.3 3,418,631 + PS417_15585 0.68 +0.5 3,418,636 - PS417_15585 0.68 -0.4
Or see this region's nucleotide sequence