Strain Fitness in Pseudomonas simiae WCS417 around PS417_15580

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15575 and PS417_15580 are separated by 109 nucleotidesPS417_15580 and PS417_15585 overlap by 4 nucleotides PS417_15575: PS417_15575 - histidine kinase, at 3,412,786 to 3,414,498 _15575 PS417_15580: PS417_15580 - DNA polymerase, at 3,414,608 to 3,417,679 _15580 PS417_15585: PS417_15585 - DNA repair nucleotidyltransferase, at 3,417,676 to 3,419,088 _15585 Position (kb) 3414 3415 3416 3417 3418Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3413.675 kb on + strand, within PS417_15575at 3413.676 kb on - strand, within PS417_15575at 3413.679 kb on + strand, within PS417_15575at 3413.679 kb on + strand, within PS417_15575at 3413.679 kb on + strand, within PS417_15575at 3413.679 kb on + strand, within PS417_15575at 3413.680 kb on - strand, within PS417_15575at 3413.680 kb on - strand, within PS417_15575at 3413.680 kb on - strand, within PS417_15575at 3414.098 kb on + strand, within PS417_15575at 3414.098 kb on + strand, within PS417_15575at 3414.257 kb on + strand, within PS417_15575at 3414.287 kb on + strand, within PS417_15575at 3414.288 kb on - strand, within PS417_15575at 3414.308 kb on + strand, within PS417_15575at 3414.308 kb on + strand, within PS417_15575at 3414.309 kb on - strand, within PS417_15575at 3414.568 kb on + strandat 3414.569 kb on - strandat 3414.569 kb on - strandat 3414.569 kb on - strandat 3414.571 kb on - strandat 3414.571 kb on - strandat 3414.573 kb on - strandat 3414.573 kb on - strandat 3414.573 kb on - strandat 3414.573 kb on - strandat 3414.573 kb on - strandat 3414.573 kb on - strandat 3414.577 kb on + strandat 3415.097 kb on + strand, within PS417_15580at 3415.097 kb on + strand, within PS417_15580at 3415.098 kb on - strand, within PS417_15580at 3415.429 kb on - strand, within PS417_15580at 3415.812 kb on + strand, within PS417_15580at 3415.848 kb on + strand, within PS417_15580at 3415.848 kb on + strand, within PS417_15580at 3416.011 kb on - strand, within PS417_15580at 3416.529 kb on + strand, within PS417_15580at 3416.530 kb on - strand, within PS417_15580at 3416.664 kb on + strand, within PS417_15580at 3416.664 kb on + strand, within PS417_15580at 3416.749 kb on + strand, within PS417_15580at 3417.078 kb on - strand, within PS417_15580at 3417.672 kb on + strandat 3417.767 kb on + strandat 3417.767 kb on + strandat 3418.631 kb on + strand, within PS417_15585at 3418.636 kb on - strand, within PS417_15585

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,413,675 + PS417_15575 0.52 +0.3
3,413,676 - PS417_15575 0.52 +0.2
3,413,679 + PS417_15575 0.52 +1.2
3,413,679 + PS417_15575 0.52 -0.2
3,413,679 + PS417_15575 0.52 +0.6
3,413,679 + PS417_15575 0.52 +0.7
3,413,680 - PS417_15575 0.52 +2.9
3,413,680 - PS417_15575 0.52 +0.0
3,413,680 - PS417_15575 0.52 +2.0
3,414,098 + PS417_15575 0.77 -0.1
3,414,098 + PS417_15575 0.77 -0.0
3,414,257 + PS417_15575 0.86 +0.6
3,414,287 + PS417_15575 0.88 -0.7
3,414,288 - PS417_15575 0.88 -0.3
3,414,308 + PS417_15575 0.89 -2.0
3,414,308 + PS417_15575 0.89 -0.0
3,414,309 - PS417_15575 0.89 +0.4
3,414,568 + -0.3
3,414,569 - -0.2
3,414,569 - +0.8
3,414,569 - +0.6
3,414,571 - -1.0
3,414,571 - -0.2
3,414,573 - -0.3
3,414,573 - -0.7
3,414,573 - -0.1
3,414,573 - +0.8
3,414,573 - +1.0
3,414,573 - +1.1
3,414,577 + +0.1
3,415,097 + PS417_15580 0.16 -2.2
3,415,097 + PS417_15580 0.16 -0.3
3,415,098 - PS417_15580 0.16 -0.2
3,415,429 - PS417_15580 0.27 -0.5
3,415,812 + PS417_15580 0.39 -0.3
3,415,848 + PS417_15580 0.40 +0.5
3,415,848 + PS417_15580 0.40 +0.3
3,416,011 - PS417_15580 0.46 -0.1
3,416,529 + PS417_15580 0.63 +0.5
3,416,530 - PS417_15580 0.63 +0.7
3,416,664 + PS417_15580 0.67 +0.3
3,416,664 + PS417_15580 0.67 +0.1
3,416,749 + PS417_15580 0.70 +2.0
3,417,078 - PS417_15580 0.80 -0.6
3,417,672 + -0.0
3,417,767 + +0.8
3,417,767 + -0.3
3,418,631 + PS417_15585 0.68 +0.5
3,418,636 - PS417_15585 0.68 -0.4

Or see this region's nucleotide sequence