Strain Fitness in Pseudomonas simiae WCS417 around PS417_15200

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15200 and PS417_15205 are separated by 412 nucleotides PS417_15200: PS417_15200 - protein activator of alkane oxidation PraB, at 3,333,029 to 3,333,523 _15200 PS417_15205: PS417_15205 - membrane protein, at 3,333,936 to 3,335,390 _15205 Position (kb) 3333 3334Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3332.080 kb on + strandat 3332.080 kb on + strandat 3332.080 kb on + strandat 3332.081 kb on - strandat 3332.085 kb on + strandat 3332.086 kb on - strandat 3332.123 kb on - strandat 3332.266 kb on + strandat 3332.266 kb on + strandat 3332.284 kb on + strandat 3332.285 kb on - strandat 3332.298 kb on - strandat 3332.505 kb on - strandat 3332.572 kb on + strandat 3332.573 kb on - strandat 3332.608 kb on + strandat 3332.688 kb on + strandat 3333.132 kb on + strand, within PS417_15200at 3333.132 kb on + strand, within PS417_15200at 3333.145 kb on + strandat 3333.146 kb on - strand, within PS417_15200at 3333.198 kb on + strandat 3333.460 kb on + strand, within PS417_15200at 3333.566 kb on + strandat 3333.643 kb on + strandat 3333.678 kb on + strandat 3333.714 kb on + strandat 3333.721 kb on - strandat 3333.826 kb on + strandat 3333.826 kb on + strandat 3333.830 kb on + strandat 3333.831 kb on - strandat 3333.831 kb on - strandat 3333.947 kb on - strandat 3333.947 kb on - strandat 3334.133 kb on + strand, within PS417_15205at 3334.133 kb on + strand, within PS417_15205at 3334.134 kb on - strand, within PS417_15205at 3334.178 kb on + strand, within PS417_15205at 3334.252 kb on + strand, within PS417_15205at 3334.252 kb on + strand, within PS417_15205at 3334.270 kb on + strand, within PS417_15205at 3334.271 kb on - strand, within PS417_15205at 3334.276 kb on + strand, within PS417_15205at 3334.277 kb on - strand, within PS417_15205at 3334.293 kb on - strand, within PS417_15205at 3334.390 kb on - strand, within PS417_15205at 3334.490 kb on + strand, within PS417_15205at 3334.490 kb on + strand, within PS417_15205

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,332,080 + -1.1
3,332,080 + +1.3
3,332,080 + -0.2
3,332,081 - +0.5
3,332,085 + +1.4
3,332,086 - +0.1
3,332,123 - +3.4
3,332,266 + -0.6
3,332,266 + -0.8
3,332,284 + +0.6
3,332,285 - +0.2
3,332,298 - -0.7
3,332,505 - +0.5
3,332,572 + -0.1
3,332,573 - -0.1
3,332,608 + +0.1
3,332,688 + -0.8
3,333,132 + PS417_15200 0.21 -1.1
3,333,132 + PS417_15200 0.21 -0.6
3,333,145 + +0.8
3,333,146 - PS417_15200 0.24 -1.2
3,333,198 + +2.4
3,333,460 + PS417_15200 0.87 -0.2
3,333,566 + -0.4
3,333,643 + +0.1
3,333,678 + +0.1
3,333,714 + -0.1
3,333,721 - +1.2
3,333,826 + -0.8
3,333,826 + -0.9
3,333,830 + +0.5
3,333,831 - -0.8
3,333,831 - -1.5
3,333,947 - +0.0
3,333,947 - +1.9
3,334,133 + PS417_15205 0.14 +0.0
3,334,133 + PS417_15205 0.14 -0.3
3,334,134 - PS417_15205 0.14 +1.0
3,334,178 + PS417_15205 0.17 -0.4
3,334,252 + PS417_15205 0.22 -0.2
3,334,252 + PS417_15205 0.22 +1.5
3,334,270 + PS417_15205 0.23 +0.0
3,334,271 - PS417_15205 0.23 +0.5
3,334,276 + PS417_15205 0.23 +0.8
3,334,277 - PS417_15205 0.23 -1.1
3,334,293 - PS417_15205 0.25 -0.7
3,334,390 - PS417_15205 0.31 -0.3
3,334,490 + PS417_15205 0.38 -1.0
3,334,490 + PS417_15205 0.38 -2.4

Or see this region's nucleotide sequence