Strain Fitness in Pseudomonas simiae WCS417 around PS417_15115

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15110 and PS417_15115 are separated by 98 nucleotidesPS417_15115 and PS417_15120 overlap by 4 nucleotides PS417_15110: PS417_15110 - protein BatD, at 3,304,493 to 3,306,133 _15110 PS417_15115: PS417_15115 - exonuclease SbcD, at 3,306,232 to 3,307,473 _15115 PS417_15120: PS417_15120 - chromosome segregation protein SMC, at 3,307,470 to 3,311,108 _15120 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3305.578 kb on - strand, within PS417_15110at 3305.578 kb on - strand, within PS417_15110at 3305.860 kb on + strand, within PS417_15110at 3306.005 kb on + strandat 3306.069 kb on + strandat 3306.070 kb on - strandat 3306.131 kb on + strandat 3306.131 kb on + strandat 3306.194 kb on - strandat 3306.212 kb on + strandat 3306.212 kb on + strandat 3306.422 kb on - strand, within PS417_15115at 3306.704 kb on - strand, within PS417_15115at 3306.704 kb on - strand, within PS417_15115at 3307.289 kb on - strand, within PS417_15115at 3307.391 kb on - strandat 3307.905 kb on + strand, within PS417_15120at 3308.055 kb on + strandat 3308.111 kb on + strand, within PS417_15120at 3308.119 kb on + strand, within PS417_15120at 3308.120 kb on - strand, within PS417_15120

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,305,578 - PS417_15110 0.66 +0.8
3,305,578 - PS417_15110 0.66 +1.5
3,305,860 + PS417_15110 0.83 +0.6
3,306,005 + -0.2
3,306,069 + -0.9
3,306,070 - -0.8
3,306,131 + +0.8
3,306,131 + +0.9
3,306,194 - -2.5
3,306,212 + -0.1
3,306,212 + -0.4
3,306,422 - PS417_15115 0.15 -2.2
3,306,704 - PS417_15115 0.38 -3.9
3,306,704 - PS417_15115 0.38 -1.2
3,307,289 - PS417_15115 0.85 -2.3
3,307,391 - -3.3
3,307,905 + PS417_15120 0.12 -2.5
3,308,055 + -0.8
3,308,111 + PS417_15120 0.18 -1.2
3,308,119 + PS417_15120 0.18 -3.0
3,308,120 - PS417_15120 0.18 -3.9

Or see this region's nucleotide sequence