Strain Fitness in Pseudomonas simiae WCS417 around PS417_14590

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14585 and PS417_14590 are separated by 94 nucleotidesPS417_14590 and PS417_14595 overlap by 6 nucleotidesPS417_14595 and PS417_14600 are separated by 116 nucleotides PS417_14585: PS417_14585 - MFS transporter, at 3,189,216 to 3,190,382 _14585 PS417_14590: PS417_14590 - LysR family transcriptional regulator, at 3,190,477 to 3,191,370 _14590 PS417_14595: PS417_14595 - pyrroline-5-carboxylate reductase, at 3,191,365 to 3,192,138 _14595 PS417_14600: PS417_14600 - bleomycin resistance protein, at 3,192,255 to 3,192,611 _14600 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -2 -1 0 1at 3189.488 kb on + strand, within PS417_14585at 3189.619 kb on - strand, within PS417_14585at 3189.620 kb on + strand, within PS417_14585at 3189.620 kb on + strand, within PS417_14585at 3189.621 kb on - strand, within PS417_14585at 3189.714 kb on - strand, within PS417_14585at 3189.715 kb on + strand, within PS417_14585at 3189.716 kb on - strand, within PS417_14585at 3189.720 kb on - strand, within PS417_14585at 3189.734 kb on + strand, within PS417_14585at 3189.734 kb on + strand, within PS417_14585at 3189.735 kb on - strand, within PS417_14585at 3189.735 kb on - strand, within PS417_14585at 3189.735 kb on - strand, within PS417_14585at 3189.735 kb on - strand, within PS417_14585at 3189.735 kb on - strand, within PS417_14585at 3189.735 kb on - strand, within PS417_14585at 3190.224 kb on + strand, within PS417_14585at 3190.238 kb on - strand, within PS417_14585at 3190.238 kb on - strand, within PS417_14585at 3190.293 kb on - strandat 3190.384 kb on + strandat 3190.435 kb on + strandat 3190.444 kb on + strandat 3190.511 kb on + strandat 3190.628 kb on + strandat 3190.628 kb on + strand, within PS417_14590at 3190.629 kb on - strand, within PS417_14590at 3190.875 kb on - strand, within PS417_14590at 3191.366 kb on + strandat 3191.368 kb on + strandat 3191.440 kb on - strandat 3191.440 kb on - strandat 3191.608 kb on - strand, within PS417_14595at 3191.639 kb on + strand, within PS417_14595at 3191.892 kb on + strand, within PS417_14595at 3191.893 kb on - strand, within PS417_14595at 3191.893 kb on - strand, within PS417_14595at 3192.177 kb on + strandat 3192.177 kb on + strandat 3192.178 kb on - strandat 3192.178 kb on - strandat 3192.218 kb on - strandat 3192.218 kb on - strandat 3192.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,189,488 + PS417_14585 0.23 -0.2
3,189,619 - PS417_14585 0.35 +0.3
3,189,620 + PS417_14585 0.35 -0.1
3,189,620 + PS417_14585 0.35 -0.5
3,189,621 - PS417_14585 0.35 -0.3
3,189,714 - PS417_14585 0.43 +1.1
3,189,715 + PS417_14585 0.43 +0.1
3,189,716 - PS417_14585 0.43 -0.4
3,189,720 - PS417_14585 0.43 +0.8
3,189,734 + PS417_14585 0.44 -1.6
3,189,734 + PS417_14585 0.44 +0.1
3,189,735 - PS417_14585 0.44 -1.2
3,189,735 - PS417_14585 0.44 -0.8
3,189,735 - PS417_14585 0.44 -0.5
3,189,735 - PS417_14585 0.44 +0.6
3,189,735 - PS417_14585 0.44 +1.0
3,189,735 - PS417_14585 0.44 -0.2
3,190,224 + PS417_14585 0.86 -0.0
3,190,238 - PS417_14585 0.88 -0.1
3,190,238 - PS417_14585 0.88 +0.5
3,190,293 - +0.3
3,190,384 + -0.2
3,190,435 + -1.4
3,190,444 + +0.6
3,190,511 + -1.2
3,190,628 + -0.8
3,190,628 + PS417_14590 0.17 -0.4
3,190,629 - PS417_14590 0.17 -2.0
3,190,875 - PS417_14590 0.45 -0.6
3,191,366 + +0.1
3,191,368 + -0.1
3,191,440 - +0.6
3,191,440 - +0.6
3,191,608 - PS417_14595 0.31 -0.9
3,191,639 + PS417_14595 0.35 +0.3
3,191,892 + PS417_14595 0.68 -0.8
3,191,893 - PS417_14595 0.68 -0.1
3,191,893 - PS417_14595 0.68 -0.7
3,192,177 + -0.4
3,192,177 + -0.3
3,192,178 - +0.1
3,192,178 - -0.4
3,192,218 - +1.0
3,192,218 - -0.0
3,192,269 + +0.5

Or see this region's nucleotide sequence