Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14585 and PS417_14590 are separated by 94 nucleotides PS417_14590 and PS417_14595 overlap by 6 nucleotides PS417_14595 and PS417_14600 are separated by 116 nucleotides
PS417_14585: PS417_14585 - MFS transporter, at 3,189,216 to 3,190,382
_14585
PS417_14590: PS417_14590 - LysR family transcriptional regulator, at 3,190,477 to 3,191,370
_14590
PS417_14595: PS417_14595 - pyrroline-5-carboxylate reductase, at 3,191,365 to 3,192,138
_14595
PS417_14600: PS417_14600 - bleomycin resistance protein, at 3,192,255 to 3,192,611
_14600
Position (kb)
3190
3191
3192 Strain fitness (log2 ratio)
-2
-1
0
1 at 3189.488 kb on + strand, within PS417_14585 at 3189.619 kb on - strand, within PS417_14585 at 3189.620 kb on + strand, within PS417_14585 at 3189.620 kb on + strand, within PS417_14585 at 3189.621 kb on - strand, within PS417_14585 at 3189.714 kb on - strand, within PS417_14585 at 3189.715 kb on + strand, within PS417_14585 at 3189.716 kb on - strand, within PS417_14585 at 3189.720 kb on - strand, within PS417_14585 at 3189.734 kb on + strand, within PS417_14585 at 3189.734 kb on + strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3189.735 kb on - strand, within PS417_14585 at 3190.224 kb on + strand, within PS417_14585 at 3190.238 kb on - strand, within PS417_14585 at 3190.238 kb on - strand, within PS417_14585 at 3190.293 kb on - strand at 3190.384 kb on + strand at 3190.435 kb on + strand at 3190.444 kb on + strand at 3190.511 kb on + strand at 3190.628 kb on + strand at 3190.628 kb on + strand, within PS417_14590 at 3190.629 kb on - strand, within PS417_14590 at 3190.875 kb on - strand, within PS417_14590 at 3191.366 kb on + strand at 3191.368 kb on + strand at 3191.440 kb on - strand at 3191.440 kb on - strand at 3191.608 kb on - strand, within PS417_14595 at 3191.639 kb on + strand, within PS417_14595 at 3191.892 kb on + strand, within PS417_14595 at 3191.893 kb on - strand, within PS417_14595 at 3191.893 kb on - strand, within PS417_14595 at 3192.177 kb on + strand at 3192.177 kb on + strand at 3192.178 kb on - strand at 3192.178 kb on - strand at 3192.218 kb on - strand at 3192.218 kb on - strand at 3192.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,189,488 + PS417_14585 0.23 -0.2 3,189,619 - PS417_14585 0.35 +0.3 3,189,620 + PS417_14585 0.35 -0.1 3,189,620 + PS417_14585 0.35 -0.5 3,189,621 - PS417_14585 0.35 -0.3 3,189,714 - PS417_14585 0.43 +1.1 3,189,715 + PS417_14585 0.43 +0.1 3,189,716 - PS417_14585 0.43 -0.4 3,189,720 - PS417_14585 0.43 +0.8 3,189,734 + PS417_14585 0.44 -1.6 3,189,734 + PS417_14585 0.44 +0.1 3,189,735 - PS417_14585 0.44 -1.2 3,189,735 - PS417_14585 0.44 -0.8 3,189,735 - PS417_14585 0.44 -0.5 3,189,735 - PS417_14585 0.44 +0.6 3,189,735 - PS417_14585 0.44 +1.0 3,189,735 - PS417_14585 0.44 -0.2 3,190,224 + PS417_14585 0.86 -0.0 3,190,238 - PS417_14585 0.88 -0.1 3,190,238 - PS417_14585 0.88 +0.5 3,190,293 - +0.3 3,190,384 + -0.2 3,190,435 + -1.4 3,190,444 + +0.6 3,190,511 + -1.2 3,190,628 + -0.8 3,190,628 + PS417_14590 0.17 -0.4 3,190,629 - PS417_14590 0.17 -2.0 3,190,875 - PS417_14590 0.45 -0.6 3,191,366 + +0.1 3,191,368 + -0.1 3,191,440 - +0.6 3,191,440 - +0.6 3,191,608 - PS417_14595 0.31 -0.9 3,191,639 + PS417_14595 0.35 +0.3 3,191,892 + PS417_14595 0.68 -0.8 3,191,893 - PS417_14595 0.68 -0.1 3,191,893 - PS417_14595 0.68 -0.7 3,192,177 + -0.4 3,192,177 + -0.3 3,192,178 - +0.1 3,192,178 - -0.4 3,192,218 - +1.0 3,192,218 - -0.0 3,192,269 + +0.5
Or see this region's nucleotide sequence