Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01390 and PS417_01395 overlap by 23 nucleotides PS417_01395 and PS417_01400 are separated by 26 nucleotides PS417_01400 and PS417_01405 are separated by 5 nucleotides
PS417_01390: PS417_01390 - PbsX family transcriptional regulator, at 303,391 to 306,204
_01390
PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781
_01395
PS417_01400: PS417_01400 - hypothetical protein, at 309,808 to 310,326
_01400
PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699
_01405
Position (kb) 306
307
308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 305.504 kb on - strand at 305.504 kb on - strand, within PS417_01390 at 305.507 kb on - strand, within PS417_01390 at 305.557 kb on + strand, within PS417_01390 at 305.558 kb on - strand, within PS417_01390 at 305.636 kb on - strand, within PS417_01390 at 305.689 kb on + strand, within PS417_01390 at 305.690 kb on - strand, within PS417_01390 at 305.738 kb on - strand, within PS417_01390 at 305.738 kb on - strand, within PS417_01390 at 305.762 kb on - strand, within PS417_01390 at 305.915 kb on - strand, within PS417_01390 at 306.202 kb on + strand at 306.203 kb on - strand at 306.338 kb on + strand at 306.338 kb on + strand at 306.339 kb on - strand at 306.339 kb on - strand at 306.349 kb on - strand at 306.482 kb on + strand at 306.694 kb on + strand, within PS417_01395 at 306.707 kb on - strand, within PS417_01395 at 306.764 kb on + strand, within PS417_01395 at 306.764 kb on + strand, within PS417_01395 at 306.765 kb on - strand, within PS417_01395 at 306.765 kb on - strand, within PS417_01395 at 306.775 kb on + strand, within PS417_01395 at 306.775 kb on + strand, within PS417_01395 at 306.776 kb on - strand, within PS417_01395 at 307.047 kb on + strand, within PS417_01395 at 307.047 kb on + strand, within PS417_01395 at 307.047 kb on + strand, within PS417_01395 at 307.048 kb on - strand, within PS417_01395 at 307.048 kb on - strand, within PS417_01395 at 307.048 kb on - strand, within PS417_01395 at 307.057 kb on + strand, within PS417_01395 at 307.347 kb on - strand, within PS417_01395 at 307.347 kb on - strand, within PS417_01395 at 307.347 kb on - strand, within PS417_01395 at 307.396 kb on + strand, within PS417_01395 at 307.396 kb on + strand, within PS417_01395 at 307.397 kb on - strand, within PS417_01395 at 307.397 kb on - strand, within PS417_01395 at 307.397 kb on - strand, within PS417_01395 at 307.400 kb on + strand, within PS417_01395 at 307.494 kb on - strand, within PS417_01395 at 307.503 kb on - strand, within PS417_01395 at 307.503 kb on - strand, within PS417_01395 at 307.683 kb on + strand, within PS417_01395 at 307.926 kb on - strand, within PS417_01395 at 308.066 kb on + strand, within PS417_01395 at 308.067 kb on - strand, within PS417_01395 at 308.217 kb on - strand, within PS417_01395 at 308.399 kb on + strand, within PS417_01395 at 308.605 kb on + strand, within PS417_01395 at 308.606 kb on - strand, within PS417_01395 at 308.884 kb on + strand, within PS417_01395 at 308.921 kb on + strand, within PS417_01395 at 308.921 kb on + strand, within PS417_01395 at 308.922 kb on - strand, within PS417_01395 at 308.923 kb on + strand, within PS417_01395 at 308.924 kb on - strand, within PS417_01395 at 309.356 kb on + strand, within PS417_01395 at 309.357 kb on - strand, within PS417_01395 at 309.392 kb on + strand, within PS417_01395 at 309.393 kb on - strand at 309.393 kb on - strand, within PS417_01395 at 309.393 kb on - strand, within PS417_01395 at 309.519 kb on - strand at 309.519 kb on - strand at 309.578 kb on + strand at 309.579 kb on - strand at 309.635 kb on + strand at 309.635 kb on + strand at 309.636 kb on - strand at 309.636 kb on - strand at 309.758 kb on + strand at 309.793 kb on - strand at 309.845 kb on + strand at 309.846 kb on - strand at 309.938 kb on - strand, within PS417_01400 at 310.148 kb on - strand, within PS417_01400 at 310.403 kb on - strand at 310.599 kb on + strand, within PS417_01405 at 310.602 kb on - strand at 310.714 kb on - strand, within PS417_01405
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 305,504 - +1.1 305,504 - PS417_01390 0.75 +2.1 305,507 - PS417_01390 0.75 +3.7 305,557 + PS417_01390 0.77 +0.4 305,558 - PS417_01390 0.77 +1.1 305,636 - PS417_01390 0.80 +1.4 305,689 + PS417_01390 0.82 +0.7 305,690 - PS417_01390 0.82 +1.1 305,738 - PS417_01390 0.83 +1.3 305,738 - PS417_01390 0.83 +0.9 305,762 - PS417_01390 0.84 +1.1 305,915 - PS417_01390 0.90 +1.1 306,202 + -1.9 306,203 - +2.1 306,338 + +1.1 306,338 + +1.2 306,339 - +2.5 306,339 - +1.2 306,349 - +0.7 306,482 + +1.0 306,694 + PS417_01395 0.14 +1.4 306,707 - PS417_01395 0.15 +1.3 306,764 + PS417_01395 0.16 +1.1 306,764 + PS417_01395 0.16 -1.7 306,765 - PS417_01395 0.16 +1.0 306,765 - PS417_01395 0.16 +1.1 306,775 + PS417_01395 0.16 +1.0 306,775 + PS417_01395 0.16 +1.1 306,776 - PS417_01395 0.17 +0.9 307,047 + PS417_01395 0.24 +1.0 307,047 + PS417_01395 0.24 +1.8 307,047 + PS417_01395 0.24 +1.9 307,048 - PS417_01395 0.24 +1.0 307,048 - PS417_01395 0.24 +1.7 307,048 - PS417_01395 0.24 +1.0 307,057 + PS417_01395 0.24 +1.1 307,347 - PS417_01395 0.32 +1.3 307,347 - PS417_01395 0.32 +0.3 307,347 - PS417_01395 0.32 +1.7 307,396 + PS417_01395 0.34 +1.4 307,396 + PS417_01395 0.34 +1.0 307,397 - PS417_01395 0.34 +1.1 307,397 - PS417_01395 0.34 +1.6 307,397 - PS417_01395 0.34 +0.9 307,400 + PS417_01395 0.34 +0.7 307,494 - PS417_01395 0.36 +1.4 307,503 - PS417_01395 0.37 +1.5 307,503 - PS417_01395 0.37 +1.1 307,683 + PS417_01395 0.42 +2.3 307,926 - PS417_01395 0.48 +1.0 308,066 + PS417_01395 0.52 +0.2 308,067 - PS417_01395 0.52 +0.0 308,217 - PS417_01395 0.57 +1.2 308,399 + PS417_01395 0.62 +1.7 308,605 + PS417_01395 0.67 +0.1 308,606 - PS417_01395 0.67 +1.4 308,884 + PS417_01395 0.75 +0.5 308,921 + PS417_01395 0.76 +0.8 308,921 + PS417_01395 0.76 +0.6 308,922 - PS417_01395 0.76 +0.9 308,923 + PS417_01395 0.76 +0.4 308,924 - PS417_01395 0.76 +1.1 309,356 + PS417_01395 0.88 +0.4 309,357 - PS417_01395 0.88 -1.4 309,392 + PS417_01395 0.89 +1.4 309,393 - +1.7 309,393 - PS417_01395 0.89 +1.8 309,393 - PS417_01395 0.89 +1.7 309,519 - +1.4 309,519 - +0.6 309,578 + -0.1 309,579 - +1.2 309,635 + +0.7 309,635 + +0.9 309,636 - +0.7 309,636 - +1.1 309,758 + -1.4 309,793 - +1.1 309,845 + +1.3 309,846 - +1.1 309,938 - PS417_01400 0.25 +1.1 310,148 - PS417_01400 0.66 +0.7 310,403 - +1.1 310,599 + PS417_01405 0.20 +0.8 310,602 - +1.6 310,714 - PS417_01405 0.28 +1.7
Or see this region's nucleotide sequence