Strain Fitness in Pseudomonas simiae WCS417 around PS417_13805

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13795 and PS417_13800 overlap by 1 nucleotidesPS417_13800 and PS417_13805 overlap by 4 nucleotidesPS417_13805 and PS417_13810 overlap by 4 nucleotidesPS417_13810 and PS417_13815 overlap by 4 nucleotidesPS417_13815 and PS417_13820 overlap by 4 nucleotides PS417_13795: PS417_13795 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 3,030,038 to 3,032,029 _13795 PS417_13800: PS417_13800 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 3,032,029 to 3,032,913 _13800 PS417_13805: PS417_13805 - 4-amino-4-deoxy-L-arabinose transferase, at 3,032,910 to 3,034,565 _13805 PS417_13810: PS417_13810 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,562 to 3,034,909 _13810 PS417_13815: PS417_13815 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,906 to 3,035,307 _13815 PS417_13820: PS417_13820 - UDP-glucose 6-dehydrogenase, at 3,035,304 to 3,036,683 _13820 Position (kb) 3032 3033 3034 3035Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3032.063 kb on - strandat 3032.233 kb on + strand, within PS417_13800at 3032.671 kb on - strand, within PS417_13800at 3032.714 kb on - strand, within PS417_13800at 3032.733 kb on - strand, within PS417_13800at 3033.081 kb on + strand, within PS417_13805at 3033.205 kb on - strand, within PS417_13805at 3033.265 kb on - strand, within PS417_13805at 3033.586 kb on + strand, within PS417_13805at 3033.586 kb on + strand, within PS417_13805at 3033.684 kb on + strand, within PS417_13805at 3033.687 kb on + strand, within PS417_13805at 3033.687 kb on + strand, within PS417_13805at 3033.687 kb on + strand, within PS417_13805at 3033.687 kb on + strand, within PS417_13805at 3033.790 kb on + strandat 3033.790 kb on + strandat 3033.790 kb on + strand, within PS417_13805at 3033.791 kb on - strand, within PS417_13805at 3033.791 kb on - strand, within PS417_13805at 3033.852 kb on + strand, within PS417_13805at 3033.852 kb on + strand, within PS417_13805at 3033.853 kb on - strand, within PS417_13805at 3033.941 kb on + strand, within PS417_13805at 3034.020 kb on + strandat 3034.021 kb on - strand, within PS417_13805at 3034.021 kb on - strand, within PS417_13805at 3034.021 kb on - strand, within PS417_13805at 3034.052 kb on - strand, within PS417_13805at 3034.327 kb on - strand, within PS417_13805at 3034.391 kb on + strand, within PS417_13805at 3034.427 kb on + strandat 3034.516 kb on - strandat 3034.905 kb on + strandat 3034.906 kb on - strandat 3035.253 kb on - strand, within PS417_13815at 3035.259 kb on + strand, within PS417_13815at 3035.283 kb on + strandat 3035.283 kb on + strandat 3035.317 kb on + strandat 3035.318 kb on - strandat 3035.332 kb on - strandat 3035.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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3,032,063 - -0.2
3,032,233 + PS417_13800 0.23 -2.0
3,032,671 - PS417_13800 0.73 -0.6
3,032,714 - PS417_13800 0.77 -0.6
3,032,733 - PS417_13800 0.80 -1.3
3,033,081 + PS417_13805 0.10 -0.5
3,033,205 - PS417_13805 0.18 -1.1
3,033,265 - PS417_13805 0.21 -2.2
3,033,586 + PS417_13805 0.41 -2.0
3,033,586 + PS417_13805 0.41 -1.2
3,033,684 + PS417_13805 0.47 -1.8
3,033,687 + PS417_13805 0.47 -1.9
3,033,687 + PS417_13805 0.47 -1.5
3,033,687 + PS417_13805 0.47 -0.8
3,033,687 + PS417_13805 0.47 -1.3
3,033,790 + +1.8
3,033,790 + -0.2
3,033,790 + PS417_13805 0.53 -1.4
3,033,791 - PS417_13805 0.53 -2.2
3,033,791 - PS417_13805 0.53 +0.4
3,033,852 + PS417_13805 0.57 -1.4
3,033,852 + PS417_13805 0.57 -2.0
3,033,853 - PS417_13805 0.57 -1.1
3,033,941 + PS417_13805 0.62 -0.9
3,034,020 + -1.2
3,034,021 - PS417_13805 0.67 -1.3
3,034,021 - PS417_13805 0.67 +0.5
3,034,021 - PS417_13805 0.67 -1.2
3,034,052 - PS417_13805 0.69 -0.9
3,034,327 - PS417_13805 0.86 -3.0
3,034,391 + PS417_13805 0.89 -1.2
3,034,427 + -1.7
3,034,516 - -0.9
3,034,905 + -0.0
3,034,906 - -1.4
3,035,253 - PS417_13815 0.86 -1.7
3,035,259 + PS417_13815 0.88 -0.4
3,035,283 + -0.3
3,035,283 + -1.2
3,035,317 + -0.1
3,035,318 - -1.3
3,035,332 - -1.2
3,035,332 - +0.4

Or see this region's nucleotide sequence