Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13795 and PS417_13800 overlap by 1 nucleotides PS417_13800 and PS417_13805 overlap by 4 nucleotides PS417_13805 and PS417_13810 overlap by 4 nucleotides PS417_13810 and PS417_13815 overlap by 4 nucleotides PS417_13815 and PS417_13820 overlap by 4 nucleotides
PS417_13795: PS417_13795 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 3,030,038 to 3,032,029
_13795
PS417_13800: PS417_13800 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 3,032,029 to 3,032,913
_13800
PS417_13805: PS417_13805 - 4-amino-4-deoxy-L-arabinose transferase, at 3,032,910 to 3,034,565
_13805
PS417_13810: PS417_13810 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,562 to 3,034,909
_13810
PS417_13815: PS417_13815 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,906 to 3,035,307
_13815
PS417_13820: PS417_13820 - UDP-glucose 6-dehydrogenase, at 3,035,304 to 3,036,683
_13820
Position (kb)
3032
3033
3034
3035 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3032.063 kb on - strand at 3032.233 kb on + strand, within PS417_13800 at 3032.671 kb on - strand, within PS417_13800 at 3032.714 kb on - strand, within PS417_13800 at 3032.733 kb on - strand, within PS417_13800 at 3033.081 kb on + strand, within PS417_13805 at 3033.205 kb on - strand, within PS417_13805 at 3033.265 kb on - strand, within PS417_13805 at 3033.586 kb on + strand, within PS417_13805 at 3033.586 kb on + strand, within PS417_13805 at 3033.684 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.790 kb on + strand at 3033.790 kb on + strand at 3033.790 kb on + strand, within PS417_13805 at 3033.791 kb on - strand, within PS417_13805 at 3033.791 kb on - strand, within PS417_13805 at 3033.852 kb on + strand, within PS417_13805 at 3033.852 kb on + strand, within PS417_13805 at 3033.853 kb on - strand, within PS417_13805 at 3033.941 kb on + strand, within PS417_13805 at 3034.020 kb on + strand at 3034.021 kb on - strand, within PS417_13805 at 3034.021 kb on - strand, within PS417_13805 at 3034.021 kb on - strand, within PS417_13805 at 3034.052 kb on - strand, within PS417_13805 at 3034.327 kb on - strand, within PS417_13805 at 3034.391 kb on + strand, within PS417_13805 at 3034.427 kb on + strand at 3034.516 kb on - strand at 3034.905 kb on + strand at 3034.906 kb on - strand at 3035.253 kb on - strand, within PS417_13815 at 3035.259 kb on + strand, within PS417_13815 at 3035.283 kb on + strand at 3035.283 kb on + strand at 3035.317 kb on + strand at 3035.318 kb on - strand at 3035.332 kb on - strand at 3035.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,032,063 - -0.2 3,032,233 + PS417_13800 0.23 -2.0 3,032,671 - PS417_13800 0.73 -0.6 3,032,714 - PS417_13800 0.77 -0.6 3,032,733 - PS417_13800 0.80 -1.3 3,033,081 + PS417_13805 0.10 -0.5 3,033,205 - PS417_13805 0.18 -1.1 3,033,265 - PS417_13805 0.21 -2.2 3,033,586 + PS417_13805 0.41 -2.0 3,033,586 + PS417_13805 0.41 -1.2 3,033,684 + PS417_13805 0.47 -1.8 3,033,687 + PS417_13805 0.47 -1.9 3,033,687 + PS417_13805 0.47 -1.5 3,033,687 + PS417_13805 0.47 -0.8 3,033,687 + PS417_13805 0.47 -1.3 3,033,790 + +1.8 3,033,790 + -0.2 3,033,790 + PS417_13805 0.53 -1.4 3,033,791 - PS417_13805 0.53 -2.2 3,033,791 - PS417_13805 0.53 +0.4 3,033,852 + PS417_13805 0.57 -1.4 3,033,852 + PS417_13805 0.57 -2.0 3,033,853 - PS417_13805 0.57 -1.1 3,033,941 + PS417_13805 0.62 -0.9 3,034,020 + -1.2 3,034,021 - PS417_13805 0.67 -1.3 3,034,021 - PS417_13805 0.67 +0.5 3,034,021 - PS417_13805 0.67 -1.2 3,034,052 - PS417_13805 0.69 -0.9 3,034,327 - PS417_13805 0.86 -3.0 3,034,391 + PS417_13805 0.89 -1.2 3,034,427 + -1.7 3,034,516 - -0.9 3,034,905 + -0.0 3,034,906 - -1.4 3,035,253 - PS417_13815 0.86 -1.7 3,035,259 + PS417_13815 0.88 -0.4 3,035,283 + -0.3 3,035,283 + -1.2 3,035,317 + -0.1 3,035,318 - -1.3 3,035,332 - -1.2 3,035,332 - +0.4
Or see this region's nucleotide sequence