Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13795 and PS417_13800 overlap by 1 nucleotides PS417_13800 and PS417_13805 overlap by 4 nucleotides
PS417_13795: PS417_13795 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 3,030,038 to 3,032,029
_13795
PS417_13800: PS417_13800 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 3,032,029 to 3,032,913
_13800
PS417_13805: PS417_13805 - 4-amino-4-deoxy-L-arabinose transferase, at 3,032,910 to 3,034,565
_13805
Position (kb)
3032
3033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3031.077 kb on - strand, within PS417_13795 at 3031.238 kb on + strand, within PS417_13795 at 3031.239 kb on - strand, within PS417_13795 at 3031.313 kb on + strand, within PS417_13795 at 3031.352 kb on + strand, within PS417_13795 at 3031.373 kb on + strand, within PS417_13795 at 3031.869 kb on - strand at 3032.063 kb on - strand at 3032.233 kb on + strand, within PS417_13800 at 3032.671 kb on - strand, within PS417_13800 at 3032.714 kb on - strand, within PS417_13800 at 3032.733 kb on - strand, within PS417_13800 at 3033.081 kb on + strand, within PS417_13805 at 3033.205 kb on - strand, within PS417_13805 at 3033.265 kb on - strand, within PS417_13805 at 3033.586 kb on + strand, within PS417_13805 at 3033.586 kb on + strand, within PS417_13805 at 3033.684 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.687 kb on + strand, within PS417_13805 at 3033.790 kb on + strand at 3033.790 kb on + strand at 3033.790 kb on + strand, within PS417_13805 at 3033.791 kb on - strand, within PS417_13805 at 3033.791 kb on - strand, within PS417_13805 at 3033.852 kb on + strand, within PS417_13805 at 3033.852 kb on + strand, within PS417_13805 at 3033.853 kb on - strand, within PS417_13805
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 3,031,077 - PS417_13795 0.52 -0.7 3,031,238 + PS417_13795 0.60 -0.4 3,031,239 - PS417_13795 0.60 -1.5 3,031,313 + PS417_13795 0.64 -3.4 3,031,352 + PS417_13795 0.66 -1.2 3,031,373 + PS417_13795 0.67 -2.9 3,031,869 - -2.2 3,032,063 - -0.2 3,032,233 + PS417_13800 0.23 -2.0 3,032,671 - PS417_13800 0.73 -0.6 3,032,714 - PS417_13800 0.77 -0.6 3,032,733 - PS417_13800 0.80 -1.3 3,033,081 + PS417_13805 0.10 -0.5 3,033,205 - PS417_13805 0.18 -1.1 3,033,265 - PS417_13805 0.21 -2.2 3,033,586 + PS417_13805 0.41 -2.0 3,033,586 + PS417_13805 0.41 -1.2 3,033,684 + PS417_13805 0.47 -1.8 3,033,687 + PS417_13805 0.47 -1.9 3,033,687 + PS417_13805 0.47 -1.5 3,033,687 + PS417_13805 0.47 -0.8 3,033,687 + PS417_13805 0.47 -1.3 3,033,790 + +1.8 3,033,790 + -0.2 3,033,790 + PS417_13805 0.53 -1.4 3,033,791 - PS417_13805 0.53 -2.2 3,033,791 - PS417_13805 0.53 +0.4 3,033,852 + PS417_13805 0.57 -1.4 3,033,852 + PS417_13805 0.57 -2.0 3,033,853 - PS417_13805 0.57 -1.1
Or see this region's nucleotide sequence