Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13065 and PS417_13070 overlap by 4 nucleotides PS417_13070 and PS417_13075 are separated by 385 nucleotides PS417_13075 and PS417_13080 overlap by 4 nucleotides
PS417_13065: PS417_13065 - UDP pyrophosphate phosphatase, at 2,855,680 to 2,856,510
_13065
PS417_13070: PS417_13070 - membrane protein, at 2,856,507 to 2,856,890
_13070
PS417_13075: PS417_13075 - hypothetical protein, at 2,857,276 to 2,857,632
_13075
PS417_13080: PS417_13080 - LysR family transcriptional regulator, at 2,857,629 to 2,858,537
_13080
Position (kb)
2857
2858 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2856.284 kb on - strand, within PS417_13065 at 2856.415 kb on + strand, within PS417_13065 at 2856.416 kb on - strand, within PS417_13065 at 2856.416 kb on - strand at 2856.452 kb on + strand at 2857.057 kb on - strand at 2857.057 kb on - strand at 2857.060 kb on + strand at 2857.082 kb on + strand at 2857.086 kb on + strand at 2857.087 kb on - strand at 2857.152 kb on + strand at 2857.152 kb on + strand at 2857.153 kb on - strand at 2857.153 kb on - strand at 2857.174 kb on - strand at 2857.251 kb on + strand at 2857.251 kb on + strand at 2857.251 kb on + strand at 2857.252 kb on - strand at 2857.252 kb on - strand at 2857.255 kb on + strand at 2857.256 kb on - strand at 2857.256 kb on - strand at 2857.566 kb on + strand, within PS417_13075 at 2857.567 kb on - strand, within PS417_13075 at 2857.567 kb on - strand, within PS417_13075 at 2857.804 kb on + strand, within PS417_13080 at 2857.804 kb on + strand, within PS417_13080 at 2858.512 kb on + strand at 2858.513 kb on - strand at 2858.513 kb on - strand at 2858.515 kb on + strand at 2858.516 kb on - strand at 2858.571 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 2,856,284 - PS417_13065 0.73 -0.5 2,856,415 + PS417_13065 0.88 -0.8 2,856,416 - PS417_13065 0.89 +0.2 2,856,416 - +0.8 2,856,452 + -0.5 2,857,057 - -1.8 2,857,057 - +0.5 2,857,060 + -0.5 2,857,082 + -0.7 2,857,086 + +1.0 2,857,087 - +1.3 2,857,152 + +0.1 2,857,152 + +1.0 2,857,153 - +0.7 2,857,153 - +3.3 2,857,174 - +0.2 2,857,251 + +1.2 2,857,251 + +1.2 2,857,251 + +0.2 2,857,252 - -0.4 2,857,252 - +0.2 2,857,255 + -0.8 2,857,256 - +0.0 2,857,256 - -0.5 2,857,566 + PS417_13075 0.81 +0.8 2,857,567 - PS417_13075 0.82 -1.2 2,857,567 - PS417_13075 0.82 -0.9 2,857,804 + PS417_13080 0.19 +1.2 2,857,804 + PS417_13080 0.19 +0.6 2,858,512 + +0.4 2,858,513 - +0.8 2,858,513 - +1.1 2,858,515 + -0.8 2,858,516 - +0.1 2,858,571 + +1.1
Or see this region's nucleotide sequence