Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01280 and PS417_01285 are separated by 141 nucleotides PS417_01285 and PS417_01290 are separated by 87 nucleotides PS417_01290 and PS417_01295 overlap by 4 nucleotides PS417_01295 and PS417_01300 are separated by 126 nucleotides
PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343
_01280
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
PS417_01290: PS417_01290 - ADP-ribose diphosphatase, at 280,235 to 280,801
_01290
PS417_01295: PS417_01295 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 280,798 to 281,634
_01295
PS417_01300: PS417_01300 - thioesterase, at 281,761 to 282,216
_01300
Position (kb) 280
281 Strain fitness (log2 ratio) -2
-1
0
1 at 279.258 kb on - strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.342 kb on - strand at 279.420 kb on - strand at 279.511 kb on - strand at 279.949 kb on - strand, within PS417_01285 at 279.971 kb on - strand, within PS417_01285 at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.163 kb on - strand at 280.166 kb on + strand at 280.166 kb on + strand at 280.167 kb on - strand at 280.167 kb on - strand at 280.203 kb on + strand at 280.205 kb on + strand at 280.206 kb on - strand at 280.206 kb on - strand at 280.269 kb on + strand at 280.430 kb on + strand, within PS417_01290 at 280.452 kb on - strand, within PS417_01290 at 280.754 kb on + strand at 281.192 kb on - strand, within PS417_01295 at 281.192 kb on - strand, within PS417_01295 at 281.577 kb on - strand at 281.645 kb on - strand at 281.778 kb on - strand at 281.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 279,258 - PS417_01280 0.80 +0.1 279,258 - PS417_01280 0.80 +0.4 279,342 - -0.2 279,420 - -0.5 279,511 - +0.0 279,949 - PS417_01285 0.70 -0.4 279,971 - PS417_01285 0.73 +0.1 280,162 + +0.6 280,162 + -0.4 280,162 + -0.5 280,163 - -0.1 280,166 + -0.2 280,166 + +0.7 280,167 - +0.3 280,167 - +1.1 280,203 + +0.1 280,205 + +0.2 280,206 - -1.2 280,206 - -0.4 280,269 + -0.2 280,430 + PS417_01290 0.34 -0.4 280,452 - PS417_01290 0.38 -1.2 280,754 + +0.5 281,192 - PS417_01295 0.47 -1.9 281,192 - PS417_01295 0.47 -0.7 281,577 - -1.3 281,645 - -0.1 281,778 - -0.9 281,778 - -0.3
Or see this region's nucleotide sequence