Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12830 and PS417_12835 are separated by 20 nucleotides PS417_12835 and PS417_12840 are separated by 113 nucleotides PS417_12840 and PS417_12845 are separated by 69 nucleotides PS417_12845 and PS417_12850 are separated by 1 nucleotides
PS417_12830: PS417_12830 - LysR family transcriptional regulator, at 2,808,254 to 2,809,162
_12830
PS417_12835: PS417_12835 - GNAT family acetyltransferase, at 2,809,183 to 2,809,851
_12835
PS417_12840: PS417_12840 - TetR family transcriptional regulator, at 2,809,965 to 2,810,558
_12840
PS417_12845: PS417_12845 - NAD(P)H dehydrogenase, at 2,810,628 to 2,811,227
_12845
PS417_12850: PS417_12850 - hypothetical protein, at 2,811,229 to 2,811,618
_12850
Position (kb)
2809
2810
2811 Strain fitness (log2 ratio)
-2
-1
0
1 at 2808.986 kb on + strand, within PS417_12830 at 2808.987 kb on - strand, within PS417_12830 at 2809.143 kb on + strand at 2809.143 kb on + strand at 2809.144 kb on - strand at 2809.201 kb on + strand at 2809.306 kb on + strand, within PS417_12835 at 2809.315 kb on + strand, within PS417_12835 at 2809.322 kb on - strand, within PS417_12835 at 2809.348 kb on + strand, within PS417_12835 at 2809.435 kb on + strand, within PS417_12835 at 2809.488 kb on - strand, within PS417_12835 at 2809.735 kb on - strand, within PS417_12835 at 2809.735 kb on - strand, within PS417_12835 at 2809.735 kb on - strand, within PS417_12835 at 2809.738 kb on + strand, within PS417_12835 at 2809.738 kb on + strand at 2809.738 kb on + strand, within PS417_12835 at 2809.739 kb on - strand, within PS417_12835 at 2809.739 kb on - strand, within PS417_12835 at 2810.141 kb on + strand, within PS417_12840 at 2810.254 kb on + strand, within PS417_12840 at 2810.255 kb on - strand, within PS417_12840 at 2810.353 kb on + strand, within PS417_12840 at 2810.353 kb on + strand, within PS417_12840 at 2810.354 kb on - strand at 2810.788 kb on + strand, within PS417_12845 at 2811.085 kb on - strand, within PS417_12845 at 2811.099 kb on + strand, within PS417_12845 at 2811.100 kb on - strand, within PS417_12845 at 2811.438 kb on - strand, within PS417_12850
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 2,808,986 + PS417_12830 0.81 +0.8 2,808,987 - PS417_12830 0.81 -0.8 2,809,143 + -0.9 2,809,143 + -0.6 2,809,144 - -0.1 2,809,201 + -0.5 2,809,306 + PS417_12835 0.18 +0.0 2,809,315 + PS417_12835 0.20 +0.3 2,809,322 - PS417_12835 0.21 -0.6 2,809,348 + PS417_12835 0.25 +0.0 2,809,435 + PS417_12835 0.38 -0.6 2,809,488 - PS417_12835 0.46 -2.3 2,809,735 - PS417_12835 0.83 -0.7 2,809,735 - PS417_12835 0.83 -0.6 2,809,735 - PS417_12835 0.83 +0.1 2,809,738 + PS417_12835 0.83 -2.2 2,809,738 + -1.2 2,809,738 + PS417_12835 0.83 +0.3 2,809,739 - PS417_12835 0.83 -0.8 2,809,739 - PS417_12835 0.83 +0.3 2,810,141 + PS417_12840 0.30 -0.3 2,810,254 + PS417_12840 0.49 -1.3 2,810,255 - PS417_12840 0.49 -1.7 2,810,353 + PS417_12840 0.65 -0.0 2,810,353 + PS417_12840 0.65 -1.2 2,810,354 - -2.0 2,810,788 + PS417_12845 0.27 +1.0 2,811,085 - PS417_12845 0.76 -0.1 2,811,099 + PS417_12845 0.79 -0.3 2,811,100 - PS417_12845 0.79 +0.6 2,811,438 - PS417_12850 0.54 -0.6
Or see this region's nucleotide sequence