Strain Fitness in Pseudomonas simiae WCS417 around PS417_12705

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12700 and PS417_12705 are separated by 22 nucleotidesPS417_12705 and PS417_12710 are separated by 10 nucleotides PS417_12700: PS417_12700 - ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data), at 2,763,597 to 2,764,700 _12700 PS417_12705: PS417_12705 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data), at 2,764,723 to 2,765,553 _12705 PS417_12710: PS417_12710 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data), at 2,765,564 to 2,766,457 _12710 Position (kb) 2764 2765 2766Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2764.037 kb on - strand, within PS417_12700at 2764.037 kb on - strand, within PS417_12700at 2764.136 kb on - strandat 2764.441 kb on + strand, within PS417_12700at 2764.450 kb on + strand, within PS417_12700at 2764.450 kb on + strand, within PS417_12700at 2764.451 kb on - strand, within PS417_12700at 2764.721 kb on + strandat 2764.724 kb on + strandat 2764.951 kb on + strand, within PS417_12705at 2764.952 kb on - strand, within PS417_12705at 2765.115 kb on - strand, within PS417_12705at 2765.271 kb on - strand, within PS417_12705at 2765.342 kb on + strand, within PS417_12705at 2765.342 kb on + strand, within PS417_12705at 2765.351 kb on + strand, within PS417_12705at 2765.352 kb on - strand, within PS417_12705at 2765.379 kb on - strand, within PS417_12705at 2765.379 kb on - strand, within PS417_12705at 2765.694 kb on + strand, within PS417_12710at 2766.233 kb on - strand, within PS417_12710at 2766.273 kb on + strand, within PS417_12710at 2766.273 kb on + strand, within PS417_12710at 2766.274 kb on - strand, within PS417_12710at 2766.327 kb on + strand, within PS417_12710at 2766.346 kb on - strand, within PS417_12710at 2766.451 kb on + strandat 2766.451 kb on + strandat 2766.451 kb on + strandat 2766.478 kb on + strandat 2766.479 kb on - strandat 2766.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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2,764,037 - PS417_12700 0.40 +0.2
2,764,037 - PS417_12700 0.40 +0.4
2,764,136 - -0.8
2,764,441 + PS417_12700 0.76 -2.0
2,764,450 + PS417_12700 0.77 +0.1
2,764,450 + PS417_12700 0.77 +0.6
2,764,451 - PS417_12700 0.77 +0.6
2,764,721 + +0.3
2,764,724 + +0.1
2,764,951 + PS417_12705 0.27 +0.3
2,764,952 - PS417_12705 0.28 +2.1
2,765,115 - PS417_12705 0.47 +0.8
2,765,271 - PS417_12705 0.66 -0.2
2,765,342 + PS417_12705 0.74 +0.0
2,765,342 + PS417_12705 0.74 +0.2
2,765,351 + PS417_12705 0.76 +0.5
2,765,352 - PS417_12705 0.76 +2.8
2,765,379 - PS417_12705 0.79 +0.3
2,765,379 - PS417_12705 0.79 +0.2
2,765,694 + PS417_12710 0.15 +0.1
2,766,233 - PS417_12710 0.75 -0.3
2,766,273 + PS417_12710 0.79 -1.1
2,766,273 + PS417_12710 0.79 +0.4
2,766,274 - PS417_12710 0.79 +0.4
2,766,327 + PS417_12710 0.85 -1.4
2,766,346 - PS417_12710 0.87 -0.3
2,766,451 + +0.5
2,766,451 + -0.2
2,766,451 + +0.9
2,766,478 + +2.1
2,766,479 - +0.8
2,766,479 - -0.4

Or see this region's nucleotide sequence