Strain Fitness in Pseudomonas simiae WCS417 around PS417_12590

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12585 and PS417_12590 are separated by 6 nucleotidesPS417_12590 and PS417_12595 are separated by 287 nucleotidesPS417_12595 and PS417_12600 are separated by 3 nucleotides PS417_12585: PS417_12585 - acriflavine resistance protein B, at 2,737,934 to 2,741,026 _12585 PS417_12590: PS417_12590 - RND transporter, at 2,741,033 to 2,742,175 _12590 PS417_12595: PS417_12595 - transcriptional regulator, at 2,742,463 to 2,743,164 _12595 PS417_12600: PS417_12600 - histidine kinase, at 2,743,168 to 2,744,469 _12600 Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2740.063 kb on - strand, within PS417_12585at 2740.158 kb on - strand, within PS417_12585at 2740.206 kb on + strand, within PS417_12585at 2740.497 kb on + strand, within PS417_12585at 2740.798 kb on - strandat 2740.882 kb on - strandat 2740.884 kb on - strandat 2740.890 kb on + strandat 2741.012 kb on - strandat 2742.276 kb on + strandat 2742.276 kb on + strandat 2742.277 kb on - strandat 2742.292 kb on + strandat 2742.292 kb on + strandat 2742.293 kb on - strandat 2742.293 kb on - strandat 2742.293 kb on - strandat 2742.293 kb on - strandat 2742.295 kb on - strandat 2742.361 kb on + strandat 2742.757 kb on + strand, within PS417_12595at 2742.940 kb on + strand, within PS417_12595at 2743.132 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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2,740,063 - PS417_12585 0.69 +2.7
2,740,158 - PS417_12585 0.72 +1.4
2,740,206 + PS417_12585 0.73 -2.0
2,740,497 + PS417_12585 0.83 +2.6
2,740,798 - +3.0
2,740,882 - +3.1
2,740,884 - +2.8
2,740,890 + +3.0
2,741,012 - +3.3
2,742,276 + -0.5
2,742,276 + -0.2
2,742,277 - -2.5
2,742,292 + -0.3
2,742,292 + -0.4
2,742,293 - -1.7
2,742,293 - +1.2
2,742,293 - -0.6
2,742,293 - +1.8
2,742,295 - -2.0
2,742,361 + +0.6
2,742,757 + PS417_12595 0.42 -1.6
2,742,940 + PS417_12595 0.68 -4.6
2,743,132 + -2.2

Or see this region's nucleotide sequence