Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01155 and PS417_01160 are separated by 214 nucleotides PS417_01160 and PS417_01165 overlap by 1 nucleotides PS417_01165 and PS417_01170 are separated by 357 nucleotides
PS417_01155: PS417_01155 - glutamate--cysteine ligase, at 253,531 to 255,114
_01155
PS417_01160: PS417_01160 - hypothetical protein, at 255,329 to 255,712
_01160
PS417_01165: PS417_01165 - transcription accessory protein, at 255,712 to 258,036
_01165
PS417_01170: PS417_01170 - chemotaxis protein CheY, at 258,394 to 259,134
_01170
Position (kb) 255
256
257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.168 kb on + strand at 255.206 kb on + strand at 255.330 kb on + strand at 255.332 kb on + strand at 255.332 kb on + strand at 255.470 kb on - strand, within PS417_01160 at 255.471 kb on + strand, within PS417_01160 at 255.471 kb on + strand, within PS417_01160 at 255.472 kb on - strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.544 kb on + strand, within PS417_01160 at 255.545 kb on - strand, within PS417_01160 at 255.545 kb on - strand, within PS417_01160 at 256.207 kb on + strand, within PS417_01165 at 256.656 kb on + strand, within PS417_01165 at 256.829 kb on + strand, within PS417_01165 at 256.967 kb on - strand, within PS417_01165 at 256.976 kb on + strand, within PS417_01165 at 257.186 kb on + strand, within PS417_01165 at 257.187 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.344 kb on - strand, within PS417_01165 at 257.495 kb on + strand, within PS417_01165 at 257.495 kb on + strand, within PS417_01165 at 257.500 kb on - strand, within PS417_01165 at 257.552 kb on + strand, within PS417_01165 at 257.552 kb on + strand, within PS417_01165 at 257.552 kb on + strand, within PS417_01165 at 257.553 kb on - strand, within PS417_01165 at 257.553 kb on - strand, within PS417_01165 at 257.724 kb on - strand, within PS417_01165 at 257.724 kb on - strand, within PS417_01165 at 257.919 kb on + strand at 257.920 kb on - strand at 258.144 kb on + strand at 258.145 kb on - strand at 258.244 kb on + strand at 258.247 kb on - strand at 258.345 kb on + strand at 258.345 kb on + strand at 258.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 255,168 + +1.5 255,206 + -0.2 255,330 + -0.9 255,332 + -0.4 255,332 + -0.3 255,470 - PS417_01160 0.37 +0.3 255,471 + PS417_01160 0.37 -1.6 255,471 + PS417_01160 0.37 +0.9 255,472 - PS417_01160 0.37 -0.3 255,544 + PS417_01160 0.56 +0.0 255,544 + PS417_01160 0.56 -0.0 255,544 + PS417_01160 0.56 +0.8 255,545 - PS417_01160 0.56 +1.0 255,545 - PS417_01160 0.56 -1.0 256,207 + PS417_01165 0.21 -0.6 256,656 + PS417_01165 0.41 -0.4 256,829 + PS417_01165 0.48 +0.7 256,967 - PS417_01165 0.54 -0.3 256,976 + PS417_01165 0.54 -1.3 257,186 + PS417_01165 0.63 -0.4 257,187 - PS417_01165 0.63 -1.2 257,344 - PS417_01165 0.70 -0.4 257,344 - PS417_01165 0.70 +0.4 257,344 - PS417_01165 0.70 -0.7 257,344 - PS417_01165 0.70 +0.4 257,495 + PS417_01165 0.77 -0.7 257,495 + PS417_01165 0.77 -1.0 257,500 - PS417_01165 0.77 -0.9 257,552 + PS417_01165 0.79 -1.7 257,552 + PS417_01165 0.79 -0.5 257,552 + PS417_01165 0.79 -0.2 257,553 - PS417_01165 0.79 -0.8 257,553 - PS417_01165 0.79 -1.9 257,724 - PS417_01165 0.87 -1.7 257,724 - PS417_01165 0.87 +0.6 257,919 + -0.3 257,920 - -0.2 258,144 + -0.3 258,145 - +0.4 258,244 + +0.8 258,247 - +2.1 258,345 + -1.2 258,345 + -0.0 258,379 + -0.6
Or see this region's nucleotide sequence