Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11605 and PS417_11610 overlap by 4 nucleotides PS417_11610 and PS417_11615 are separated by 10 nucleotides PS417_11615 and PS417_11620 are separated by 149 nucleotides
PS417_11605: PS417_11605 - urea ABC transporter permease, at 2,496,289 to 2,497,452
_11605
PS417_11610: PS417_11610 - urea ABC transporter ATP-binding protein, at 2,497,449 to 2,498,207
_11610
PS417_11615: PS417_11615 - urea ABC transporter ATP-binding protein, at 2,498,218 to 2,498,907
_11615
PS417_11620: PS417_11620 - hypothetical protein, at 2,499,057 to 2,500,295
_11620
Position (kb)
2498
2499 Strain fitness (log2 ratio)
-1
0
1 at 2497.234 kb on + strand, within PS417_11605 at 2497.303 kb on + strand, within PS417_11605 at 2497.802 kb on - strand, within PS417_11610 at 2497.949 kb on - strand, within PS417_11610 at 2498.456 kb on - strand, within PS417_11615 at 2498.506 kb on - strand, within PS417_11615 at 2498.931 kb on + strand at 2499.039 kb on - strand at 2499.039 kb on - strand at 2499.065 kb on + strand at 2499.066 kb on - strand at 2499.144 kb on + strand at 2499.144 kb on + strand at 2499.210 kb on - strand, within PS417_11620 at 2499.290 kb on + strand, within PS417_11620 at 2499.291 kb on - strand, within PS417_11620 at 2499.299 kb on - strand, within PS417_11620 at 2499.415 kb on - strand, within PS417_11620 at 2499.418 kb on - strand, within PS417_11620 at 2499.507 kb on + strand, within PS417_11620 at 2499.524 kb on + strand, within PS417_11620 at 2499.840 kb on + strand, within PS417_11620 at 2499.841 kb on - strand, within PS417_11620 at 2499.844 kb on - strand, within PS417_11620 at 2499.888 kb on + strand, within PS417_11620
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 2,497,234 + PS417_11605 0.81 -0.1 2,497,303 + PS417_11605 0.87 +0.3 2,497,802 - PS417_11610 0.47 +0.8 2,497,949 - PS417_11610 0.66 +0.8 2,498,456 - PS417_11615 0.34 -0.4 2,498,506 - PS417_11615 0.42 -1.1 2,498,931 + -0.5 2,499,039 - +1.1 2,499,039 - -0.0 2,499,065 + -0.2 2,499,066 - +0.0 2,499,144 + -0.0 2,499,144 + +0.8 2,499,210 - PS417_11620 0.12 -0.4 2,499,290 + PS417_11620 0.19 +0.5 2,499,291 - PS417_11620 0.19 +0.5 2,499,299 - PS417_11620 0.20 +0.8 2,499,415 - PS417_11620 0.29 +0.3 2,499,418 - PS417_11620 0.29 +0.0 2,499,507 + PS417_11620 0.36 -0.4 2,499,524 + PS417_11620 0.38 +0.6 2,499,840 + PS417_11620 0.63 +0.1 2,499,841 - PS417_11620 0.63 -1.6 2,499,844 - PS417_11620 0.64 -0.2 2,499,888 + PS417_11620 0.67 +0.2
Or see this region's nucleotide sequence