Strain Fitness in Pseudomonas simiae WCS417 around PS417_11615
Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,497,234 | + | PS417_11605 | 0.81 | -0.1 | |
2,497,303 | + | PS417_11605 | 0.87 | +0.3 | |
2,497,802 | - | PS417_11610 | 0.47 | +0.8 | |
2,497,949 | - | PS417_11610 | 0.66 | +0.8 | |
2,498,456 | - | PS417_11615 | 0.34 | -0.4 | |
2,498,506 | - | PS417_11615 | 0.42 | -1.1 | |
2,498,931 | + | -0.5 | |||
2,499,039 | - | +1.1 | |||
2,499,039 | - | -0.0 | |||
2,499,065 | + | -0.2 | |||
2,499,066 | - | +0.0 | |||
2,499,144 | + | -0.0 | |||
2,499,144 | + | +0.8 | |||
2,499,210 | - | PS417_11620 | 0.12 | -0.4 | |
2,499,290 | + | PS417_11620 | 0.19 | +0.5 | |
2,499,291 | - | PS417_11620 | 0.19 | +0.5 | |
2,499,299 | - | PS417_11620 | 0.20 | +0.8 | |
2,499,415 | - | PS417_11620 | 0.29 | +0.3 | |
2,499,418 | - | PS417_11620 | 0.29 | +0.0 | |
2,499,507 | + | PS417_11620 | 0.36 | -0.4 | |
2,499,524 | + | PS417_11620 | 0.38 | +0.6 | |
2,499,840 | + | PS417_11620 | 0.63 | +0.1 | |
2,499,841 | - | PS417_11620 | 0.63 | -1.6 | |
2,499,844 | - | PS417_11620 | 0.64 | -0.2 | |
2,499,888 | + | PS417_11620 | 0.67 | +0.2 |
Or see this region's nucleotide sequence