Strain Fitness in Pseudomonas simiae WCS417 around PS417_11215
Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,403,729 | - | PS417_11205 | 0.58 | +0.4 | |
2,404,271 | + | PS417_11210 | 0.19 | +0.5 | |
2,404,931 | + | PS417_11215 | 0.36 | -0.4 | |
2,404,993 | + | PS417_11215 | 0.43 | +1.2 | |
2,405,065 | - | PS417_11215 | 0.52 | +0.1 | |
2,405,149 | - | PS417_11215 | 0.62 | +1.5 | |
2,405,251 | - | PS417_11215 | 0.75 | +0.1 | |
2,405,251 | - | PS417_11215 | 0.75 | +0.3 | |
2,405,422 | - | -0.5 | |||
2,405,422 | - | -1.9 | |||
2,405,497 | + | +0.3 | |||
2,405,526 | - | +1.9 | |||
2,405,578 | - | -0.3 | |||
2,405,625 | + | +3.9 | |||
2,405,671 | - | +0.2 | |||
2,405,671 | - | -0.3 | |||
2,405,755 | - | PS417_11220 | 0.15 | +0.6 | |
2,405,874 | + | PS417_11220 | 0.24 | -0.1 | |
2,406,013 | + | -0.7 | |||
2,406,016 | - | PS417_11220 | 0.34 | -0.2 | |
2,406,171 | + | PS417_11220 | 0.45 | +0.2 | |
2,406,192 | + | PS417_11220 | 0.46 | -0.1 | |
2,406,201 | + | PS417_11220 | 0.47 | +0.2 | |
2,406,201 | + | PS417_11220 | 0.47 | -0.7 |
Or see this region's nucleotide sequence