Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09915 and PS417_09920 are separated by 102 nucleotides PS417_09920 and PS417_09925 overlap by 11 nucleotides PS417_09925 and PS417_09930 overlap by 23 nucleotides PS417_09930 and PS417_09935 are separated by 145 nucleotides
PS417_09915: PS417_09915 - hypothetical protein, at 2,142,807 to 2,143,922
_09915
PS417_09920: PS417_09920 - hypothetical protein, at 2,144,025 to 2,144,252
_09920
PS417_09925: PS417_09925 - hypothetical protein, at 2,144,242 to 2,144,478
_09925
PS417_09930: PS417_09930 - hypothetical protein, at 2,144,456 to 2,144,722
_09930
PS417_09935: PS417_09935 - hypothetical protein, at 2,144,868 to 2,145,392
_09935
Position (kb)
2144
2145 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2143.208 kb on + strand at 2143.209 kb on - strand, within PS417_09915 at 2143.563 kb on - strand, within PS417_09915 at 2143.813 kb on + strand at 2143.891 kb on - strand at 2144.053 kb on + strand, within PS417_09920 at 2144.089 kb on + strand, within PS417_09920 at 2144.109 kb on + strand, within PS417_09920 at 2144.109 kb on + strand, within PS417_09920 at 2144.109 kb on + strand, within PS417_09920 at 2144.110 kb on - strand, within PS417_09920 at 2144.110 kb on - strand, within PS417_09920 at 2144.111 kb on + strand, within PS417_09920 at 2144.112 kb on - strand, within PS417_09920 at 2144.375 kb on + strand, within PS417_09925 at 2144.376 kb on - strand, within PS417_09925 at 2144.415 kb on + strand, within PS417_09925 at 2144.416 kb on - strand, within PS417_09925 at 2144.419 kb on + strand, within PS417_09925 at 2144.690 kb on + strand, within PS417_09930 at 2144.691 kb on - strand, within PS417_09930 at 2144.701 kb on - strand at 2144.811 kb on + strand at 2144.953 kb on + strand, within PS417_09935 at 2144.953 kb on + strand, within PS417_09935 at 2144.953 kb on + strand, within PS417_09935 at 2144.953 kb on + strand, within PS417_09935 at 2144.953 kb on + strand, within PS417_09935 at 2144.954 kb on - strand, within PS417_09935 at 2144.954 kb on - strand at 2144.954 kb on - strand, within PS417_09935 at 2144.984 kb on - strand at 2145.168 kb on - strand, within PS417_09935
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 2,143,208 + -0.1 2,143,209 - PS417_09915 0.36 +0.2 2,143,563 - PS417_09915 0.68 -0.7 2,143,813 + +2.0 2,143,891 - +0.5 2,144,053 + PS417_09920 0.12 +0.9 2,144,089 + PS417_09920 0.28 -0.1 2,144,109 + PS417_09920 0.37 -0.6 2,144,109 + PS417_09920 0.37 +0.5 2,144,109 + PS417_09920 0.37 -2.7 2,144,110 - PS417_09920 0.37 -2.0 2,144,110 - PS417_09920 0.37 -2.3 2,144,111 + PS417_09920 0.38 +0.2 2,144,112 - PS417_09920 0.38 -1.9 2,144,375 + PS417_09925 0.56 +0.3 2,144,376 - PS417_09925 0.57 -0.7 2,144,415 + PS417_09925 0.73 +0.0 2,144,416 - PS417_09925 0.73 -1.2 2,144,419 + PS417_09925 0.75 +0.3 2,144,690 + PS417_09930 0.88 -0.3 2,144,691 - PS417_09930 0.88 +1.6 2,144,701 - +0.3 2,144,811 + -0.1 2,144,953 + PS417_09935 0.16 -1.2 2,144,953 + PS417_09935 0.16 +0.3 2,144,953 + PS417_09935 0.16 +1.2 2,144,953 + PS417_09935 0.16 -0.3 2,144,953 + PS417_09935 0.16 +0.9 2,144,954 - PS417_09935 0.16 -0.4 2,144,954 - +0.9 2,144,954 - PS417_09935 0.16 -1.0 2,144,984 - -0.1 2,145,168 - PS417_09935 0.57 +0.2
Or see this region's nucleotide sequence