Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09360 and PS417_09365 are separated by 347 nucleotides PS417_09365 and PS417_09370 are separated by 71 nucleotides PS417_09370 and PS417_09375 overlap by 1 nucleotides
PS417_09360: PS417_09360 - ABC transporter substrate-binding protein, at 2,030,380 to 2,031,456
_09360
PS417_09365: PS417_09365 - MFS transporter, at 2,031,804 to 2,032,517
_09365
PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503
_09370
PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402
_09375
Position (kb)
2031
2032
2033 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2030.911 kb on + strand, within PS417_09360 at 2030.963 kb on + strand, within PS417_09360 at 2030.963 kb on + strand, within PS417_09360 at 2030.994 kb on + strand, within PS417_09360 at 2031.054 kb on - strand, within PS417_09360 at 2031.122 kb on + strand, within PS417_09360 at 2031.337 kb on + strand, within PS417_09360 at 2031.337 kb on + strand at 2031.526 kb on + strand at 2031.526 kb on + strand at 2031.613 kb on + strand at 2031.656 kb on + strand at 2031.657 kb on - strand at 2031.783 kb on + strand at 2031.792 kb on + strand at 2031.792 kb on + strand at 2031.962 kb on - strand, within PS417_09365 at 2031.987 kb on + strand at 2032.035 kb on + strand, within PS417_09365 at 2032.224 kb on + strand at 2032.224 kb on + strand, within PS417_09365 at 2032.224 kb on + strand, within PS417_09365 at 2032.224 kb on + strand, within PS417_09365 at 2032.225 kb on - strand, within PS417_09365 at 2032.228 kb on + strand, within PS417_09365 at 2032.229 kb on - strand, within PS417_09365 at 2032.435 kb on - strand, within PS417_09365 at 2032.857 kb on + strand, within PS417_09370 at 2033.346 kb on - strand, within PS417_09370 at 2033.349 kb on - strand, within PS417_09370
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 2,030,911 + PS417_09360 0.49 -1.3 2,030,963 + PS417_09360 0.54 -0.1 2,030,963 + PS417_09360 0.54 +0.4 2,030,994 + PS417_09360 0.57 -0.7 2,031,054 - PS417_09360 0.63 +0.7 2,031,122 + PS417_09360 0.69 +0.5 2,031,337 + PS417_09360 0.89 -0.1 2,031,337 + -0.1 2,031,526 + -0.5 2,031,526 + +0.3 2,031,613 + +0.7 2,031,656 + -0.1 2,031,657 - -0.3 2,031,783 + +0.0 2,031,792 + +1.5 2,031,792 + +0.4 2,031,962 - PS417_09365 0.22 -0.3 2,031,987 + +2.9 2,032,035 + PS417_09365 0.32 -1.1 2,032,224 + +0.9 2,032,224 + PS417_09365 0.59 -1.7 2,032,224 + PS417_09365 0.59 -0.4 2,032,224 + PS417_09365 0.59 -0.2 2,032,225 - PS417_09365 0.59 -0.9 2,032,228 + PS417_09365 0.59 +0.3 2,032,229 - PS417_09365 0.60 -0.9 2,032,435 - PS417_09365 0.88 +0.1 2,032,857 + PS417_09370 0.29 -0.3 2,033,346 - PS417_09370 0.83 -0.9 2,033,349 - PS417_09370 0.83 -0.1
Or see this region's nucleotide sequence