Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08985 and PS417_08990 overlap by 4 nucleotides
PS417_08985: PS417_08985 - histidine kinase, at 1,955,938 to 1,957,839
_08985
PS417_08990: PS417_08990 - ABC transporter substrate-binding protein, at 1,957,836 to 1,958,765
_08990
Position (kb)
1957
1958
1959 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1956.883 kb on - strand, within PS417_08985 at 1957.152 kb on + strand, within PS417_08985 at 1957.152 kb on + strand, within PS417_08985 at 1957.152 kb on + strand, within PS417_08985 at 1957.208 kb on + strand, within PS417_08985 at 1957.300 kb on - strand, within PS417_08985 at 1957.404 kb on - strand, within PS417_08985 at 1957.544 kb on + strand, within PS417_08985 at 1957.544 kb on + strand, within PS417_08985 at 1957.544 kb on + strand, within PS417_08985 at 1957.545 kb on - strand, within PS417_08985 at 1958.029 kb on + strand, within PS417_08990 at 1958.029 kb on + strand, within PS417_08990 at 1958.137 kb on + strand, within PS417_08990 at 1958.137 kb on + strand, within PS417_08990 at 1958.166 kb on + strand, within PS417_08990 at 1958.210 kb on + strand, within PS417_08990 at 1958.251 kb on - strand, within PS417_08990 at 1958.390 kb on + strand, within PS417_08990 at 1958.579 kb on + strand, within PS417_08990 at 1958.792 kb on + strand at 1958.813 kb on + strand at 1958.813 kb on + strand at 1958.813 kb on + strand at 1958.814 kb on - strand at 1958.814 kb on - strand at 1958.814 kb on - strand at 1958.814 kb on - strand at 1958.963 kb on + strand at 1958.963 kb on + strand at 1958.966 kb on + strand at 1958.967 kb on - strand at 1958.967 kb on - strand at 1959.077 kb on + strand at 1959.077 kb on + strand at 1959.078 kb on - strand at 1959.083 kb on + strand at 1959.083 kb on + strand at 1959.083 kb on + strand at 1959.084 kb on - strand at 1959.084 kb on - strand at 1959.084 kb on - strand at 1959.177 kb on - strand at 1959.180 kb on + strand at 1959.224 kb on + strand at 1959.225 kb on - strand at 1959.275 kb on + strand at 1959.276 kb on - strand at 1959.446 kb on + strand at 1959.482 kb on + strand at 1959.536 kb on + strand at 1959.536 kb on + strand at 1959.536 kb on + strand at 1959.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 1,956,883 - PS417_08985 0.50 -0.4 1,957,152 + PS417_08985 0.64 +0.2 1,957,152 + PS417_08985 0.64 +2.9 1,957,152 + PS417_08985 0.64 +0.0 1,957,208 + PS417_08985 0.67 +0.4 1,957,300 - PS417_08985 0.72 +0.8 1,957,404 - PS417_08985 0.77 -1.1 1,957,544 + PS417_08985 0.84 +0.5 1,957,544 + PS417_08985 0.84 +0.6 1,957,544 + PS417_08985 0.84 +0.1 1,957,545 - PS417_08985 0.84 +0.5 1,958,029 + PS417_08990 0.21 -1.5 1,958,029 + PS417_08990 0.21 -0.1 1,958,137 + PS417_08990 0.32 -2.5 1,958,137 + PS417_08990 0.32 +0.7 1,958,166 + PS417_08990 0.35 +0.2 1,958,210 + PS417_08990 0.40 -2.6 1,958,251 - PS417_08990 0.45 -2.4 1,958,390 + PS417_08990 0.60 -0.5 1,958,579 + PS417_08990 0.80 +0.2 1,958,792 + -0.2 1,958,813 + -0.6 1,958,813 + +0.9 1,958,813 + +1.1 1,958,814 - +0.5 1,958,814 - -0.8 1,958,814 - +0.7 1,958,814 - -1.5 1,958,963 + +0.0 1,958,963 + +0.2 1,958,966 + +0.1 1,958,967 - +0.1 1,958,967 - -0.4 1,959,077 + +1.7 1,959,077 + +1.3 1,959,078 - -0.2 1,959,083 + -0.2 1,959,083 + +0.7 1,959,083 + -0.7 1,959,084 - -0.0 1,959,084 - -0.6 1,959,084 - +0.7 1,959,177 - +0.4 1,959,180 + -0.5 1,959,224 + -0.4 1,959,225 - -0.0 1,959,275 + -1.4 1,959,276 - +0.2 1,959,446 + +1.8 1,959,482 + -0.9 1,959,536 + -0.5 1,959,536 + -0.4 1,959,536 + +0.3 1,959,728 + +0.6
Or see this region's nucleotide sequence