Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07700 and PS417_07705 are separated by 110 nucleotides PS417_07705 and PS417_07710 are separated by 195 nucleotides PS417_07710 and PS417_07715 are separated by 60 nucleotides PS417_07715 and PS417_07720 are separated by 276 nucleotides
PS417_07700: PS417_07700 - chromosome partitioning protein ParA, at 1,696,817 to 1,697,083
_07700
PS417_07705: PS417_07705 - phosphatase, at 1,697,194 to 1,697,802
_07705
PS417_07710: PS417_07710 - membrane protein, at 1,697,998 to 1,698,687
_07710
PS417_07715: PS417_07715 - pilus assembly protein, at 1,698,748 to 1,699,044
_07715
PS417_07720: PS417_07720 - chemotaxis protein CheY, at 1,699,321 to 1,700,502
_07720
Position (kb)
1697
1698
1699 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1697.099 kb on - strand at 1697.104 kb on + strand at 1697.116 kb on + strand at 1697.157 kb on - strand at 1697.157 kb on - strand at 1697.162 kb on - strand at 1697.162 kb on - strand at 1697.319 kb on + strand, within PS417_07705 at 1697.320 kb on - strand, within PS417_07705 at 1697.786 kb on - strand at 1697.868 kb on - strand at 1697.868 kb on - strand at 1697.891 kb on + strand at 1697.892 kb on - strand at 1697.892 kb on - strand at 1697.908 kb on - strand at 1697.908 kb on - strand at 1697.908 kb on - strand at 1697.918 kb on + strand at 1697.937 kb on + strand at 1697.938 kb on - strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.939 kb on + strand at 1697.940 kb on - strand at 1697.951 kb on + strand at 1697.997 kb on + strand at 1697.998 kb on - strand at 1698.117 kb on + strand, within PS417_07710 at 1698.138 kb on + strand, within PS417_07710 at 1698.139 kb on - strand, within PS417_07710 at 1698.139 kb on - strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.142 kb on + strand, within PS417_07710 at 1698.143 kb on - strand, within PS417_07710 at 1698.143 kb on - strand, within PS417_07710 at 1698.425 kb on - strand, within PS417_07710 at 1698.479 kb on - strand, within PS417_07710 at 1698.479 kb on - strand, within PS417_07710 at 1698.491 kb on - strand, within PS417_07710 at 1698.509 kb on - strand, within PS417_07710 at 1698.610 kb on + strand, within PS417_07710 at 1698.610 kb on + strand, within PS417_07710 at 1698.611 kb on - strand, within PS417_07710 at 1698.632 kb on - strand at 1698.685 kb on + strand at 1698.686 kb on - strand at 1698.884 kb on - strand, within PS417_07715 at 1699.057 kb on + strand at 1699.058 kb on - strand at 1699.085 kb on + strand at 1699.085 kb on + strand at 1699.085 kb on + strand at 1699.085 kb on + strand at 1699.086 kb on - strand at 1699.109 kb on + strand at 1699.109 kb on + strand at 1699.195 kb on + strand at 1699.243 kb on + strand at 1699.288 kb on + strand at 1699.298 kb on + strand at 1699.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 1,697,099 - -0.0 1,697,104 + -0.4 1,697,116 + -0.3 1,697,157 - +1.6 1,697,157 - -0.2 1,697,162 - -1.2 1,697,162 - -1.7 1,697,319 + PS417_07705 0.21 -0.4 1,697,320 - PS417_07705 0.21 -0.0 1,697,786 - -2.0 1,697,868 - -1.5 1,697,868 - -2.1 1,697,891 + -1.8 1,697,892 - -1.3 1,697,892 - -1.8 1,697,908 - -3.8 1,697,908 - -2.4 1,697,908 - -0.9 1,697,918 + +0.2 1,697,937 + -0.1 1,697,938 - +0.7 1,697,939 + -0.1 1,697,939 + -0.1 1,697,939 + -1.3 1,697,939 + -0.3 1,697,939 + -2.0 1,697,939 + +0.2 1,697,940 - -1.3 1,697,951 + -1.0 1,697,997 + -2.5 1,697,998 - -3.1 1,698,117 + PS417_07710 0.17 -0.1 1,698,138 + PS417_07710 0.20 -5.1 1,698,139 - PS417_07710 0.20 -2.0 1,698,139 - PS417_07710 0.20 -2.7 1,698,142 + PS417_07710 0.21 -2.8 1,698,142 + PS417_07710 0.21 -3.5 1,698,142 + PS417_07710 0.21 -2.5 1,698,142 + PS417_07710 0.21 -5.4 1,698,142 + PS417_07710 0.21 -3.7 1,698,143 - PS417_07710 0.21 -3.9 1,698,143 - PS417_07710 0.21 -5.5 1,698,425 - PS417_07710 0.62 -4.6 1,698,479 - PS417_07710 0.70 -2.3 1,698,479 - PS417_07710 0.70 -1.8 1,698,491 - PS417_07710 0.71 -2.1 1,698,509 - PS417_07710 0.74 -2.3 1,698,610 + PS417_07710 0.89 -4.2 1,698,610 + PS417_07710 0.89 -3.1 1,698,611 - PS417_07710 0.89 -3.0 1,698,632 - -3.3 1,698,685 + -0.1 1,698,686 - -0.3 1,698,884 - PS417_07715 0.46 +0.9 1,699,057 + -1.3 1,699,058 - -0.2 1,699,085 + -0.3 1,699,085 + -0.7 1,699,085 + +1.4 1,699,085 + -0.2 1,699,086 - +0.0 1,699,109 + -0.2 1,699,109 + -0.6 1,699,195 + +0.2 1,699,243 + +0.6 1,699,288 + +0.3 1,699,298 + +0.7 1,699,298 + -0.0
Or see this region's nucleotide sequence