Strain Fitness in Pseudomonas simiae WCS417 around PS417_07095

Experiment: Nalidixic 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07090 and PS417_07095 are separated by 0 nucleotidesPS417_07095 and PS417_07100 are separated by 36 nucleotides PS417_07090: PS417_07090 - histidine kinase, at 1,568,949 to 1,570,334 _07090 PS417_07095: PS417_07095 - histidine kinase, at 1,570,335 to 1,571,156 _07095 PS417_07100: PS417_07100 - aminomethyltransferase, at 1,571,193 to 1,572,134 _07100 Position (kb) 1570 1571 1572Strain fitness (log2 ratio) -2 -1 0 1 2at 1569.381 kb on - strand, within PS417_07090at 1569.559 kb on + strand, within PS417_07090at 1570.030 kb on + strand, within PS417_07090at 1570.339 kb on + strandat 1570.340 kb on - strandat 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.471 kb on + strand, within PS417_07095at 1570.472 kb on - strand, within PS417_07095at 1570.472 kb on - strand, within PS417_07095at 1570.472 kb on - strand, within PS417_07095at 1570.502 kb on - strand, within PS417_07095at 1570.613 kb on + strand, within PS417_07095at 1570.660 kb on + strandat 1570.769 kb on - strand, within PS417_07095at 1570.804 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1570.889 kb on - strand, within PS417_07095at 1571.121 kb on + strandat 1571.167 kb on + strandat 1571.168 kb on - strandat 1571.227 kb on + strandat 1571.227 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml
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1,569,381 - PS417_07090 0.31 +0.1
1,569,559 + PS417_07090 0.44 +0.1
1,570,030 + PS417_07090 0.78 -0.2
1,570,339 + +0.3
1,570,340 - +0.1
1,570,471 + PS417_07095 0.17 -0.2
1,570,471 + PS417_07095 0.17 -1.5
1,570,471 + PS417_07095 0.17 -1.2
1,570,471 + PS417_07095 0.17 -1.0
1,570,471 + PS417_07095 0.17 -0.4
1,570,472 - PS417_07095 0.17 -0.6
1,570,472 - PS417_07095 0.17 -0.5
1,570,472 - PS417_07095 0.17 -1.1
1,570,502 - PS417_07095 0.20 -1.2
1,570,613 + PS417_07095 0.34 -0.8
1,570,660 + +2.6
1,570,769 - PS417_07095 0.53 +0.0
1,570,804 - PS417_07095 0.57 -0.2
1,570,889 - PS417_07095 0.67 +0.3
1,570,889 - PS417_07095 0.67 -1.9
1,570,889 - PS417_07095 0.67 +0.5
1,570,889 - PS417_07095 0.67 -0.3
1,571,121 + -0.6
1,571,167 + -1.0
1,571,168 - +0.6
1,571,227 + +1.0
1,571,227 + -0.8

Or see this region's nucleotide sequence