Experiment: Nalidixic 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06765 and PS417_06770 overlap by 4 nucleotides PS417_06770 and PS417_06775 are separated by 3 nucleotides
PS417_06765: PS417_06765 - multidrug transporter, at 1,496,880 to 1,498,337
_06765
PS417_06770: PS417_06770 - multidrug transporter, at 1,498,334 to 1,501,495
_06770
PS417_06775: PS417_06775 - antibiotic transporter, at 1,501,499 to 1,502,653
_06775
Position (kb)
1498
1499
1500
1501
1502 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1498.769 kb on + strand, within PS417_06770 at 1498.770 kb on - strand, within PS417_06770 at 1498.832 kb on + strand, within PS417_06770 at 1498.919 kb on - strand, within PS417_06770 at 1499.167 kb on - strand, within PS417_06770 at 1499.167 kb on - strand, within PS417_06770 at 1499.208 kb on + strand, within PS417_06770 at 1499.209 kb on - strand, within PS417_06770 at 1499.521 kb on - strand, within PS417_06770 at 1499.862 kb on + strand, within PS417_06770 at 1499.917 kb on - strand, within PS417_06770 at 1500.476 kb on + strand, within PS417_06770 at 1500.673 kb on - strand, within PS417_06770 at 1501.026 kb on + strand, within PS417_06770 at 1501.026 kb on + strand, within PS417_06770 at 1501.027 kb on - strand, within PS417_06770 at 1501.250 kb on - strand at 1501.250 kb on - strand at 1501.250 kb on - strand at 1501.675 kb on - strand, within PS417_06775 at 1501.678 kb on + strand, within PS417_06775 at 1501.679 kb on - strand, within PS417_06775 at 1501.679 kb on - strand, within PS417_06775 at 1501.679 kb on - strand, within PS417_06775 at 1501.942 kb on - strand, within PS417_06775 at 1502.257 kb on - strand, within PS417_06775 at 1502.257 kb on - strand, within PS417_06775 at 1502.299 kb on - strand, within PS417_06775 at 1502.362 kb on - strand, within PS417_06775 at 1502.383 kb on - strand, within PS417_06775
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.025 mg/ml remove 1,498,769 + PS417_06770 0.14 -4.0 1,498,770 - PS417_06770 0.14 -2.3 1,498,832 + PS417_06770 0.16 +0.0 1,498,919 - PS417_06770 0.19 -4.3 1,499,167 - PS417_06770 0.26 -1.5 1,499,167 - PS417_06770 0.26 -3.0 1,499,208 + PS417_06770 0.28 -3.0 1,499,209 - PS417_06770 0.28 -4.1 1,499,521 - PS417_06770 0.38 -3.3 1,499,862 + PS417_06770 0.48 -4.5 1,499,917 - PS417_06770 0.50 -3.2 1,500,476 + PS417_06770 0.68 -1.5 1,500,673 - PS417_06770 0.74 -1.0 1,501,026 + PS417_06770 0.85 -5.9 1,501,026 + PS417_06770 0.85 -1.5 1,501,027 - PS417_06770 0.85 -3.5 1,501,250 - -1.0 1,501,250 - -2.2 1,501,250 - -5.2 1,501,675 - PS417_06775 0.15 +1.0 1,501,678 + PS417_06775 0.15 -3.4 1,501,679 - PS417_06775 0.16 -3.7 1,501,679 - PS417_06775 0.16 -3.5 1,501,679 - PS417_06775 0.16 -4.5 1,501,942 - PS417_06775 0.38 -6.3 1,502,257 - PS417_06775 0.66 -2.3 1,502,257 - PS417_06775 0.66 -2.3 1,502,299 - PS417_06775 0.69 +0.0 1,502,362 - PS417_06775 0.75 -3.0 1,502,383 - PS417_06775 0.77 -4.2
Or see this region's nucleotide sequence