Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4368 and Echvi_4369 are separated by 37 nucleotides Echvi_4369 and Echvi_4370 are separated by 97 nucleotides Echvi_4370 and Echvi_4371 are separated by 166 nucleotides
Echvi_4368: Echvi_4368 - Cyclic nucleotide-binding domain., at 5,223,214 to 5,224,743
_4368
Echvi_4369: Echvi_4369 - hypothetical protein, at 5,224,781 to 5,224,918
_4369
Echvi_4370: Echvi_4370 - hypothetical protein, at 5,225,016 to 5,225,447
_4370
Echvi_4371: Echvi_4371 - hypothetical protein, at 5,225,614 to 5,225,883
_4371
Position (kb) 5224
5225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5223.803 kb on + strand, within Echvi_4368 at 5223.804 kb on - strand, within Echvi_4368 at 5223.823 kb on + strand, within Echvi_4368 at 5223.860 kb on - strand, within Echvi_4368 at 5223.860 kb on - strand, within Echvi_4368 at 5223.915 kb on - strand, within Echvi_4368 at 5223.994 kb on + strand, within Echvi_4368 at 5223.994 kb on + strand, within Echvi_4368 at 5224.271 kb on - strand, within Echvi_4368 at 5224.372 kb on + strand, within Echvi_4368 at 5224.515 kb on - strand, within Echvi_4368 at 5224.744 kb on - strand at 5224.755 kb on + strand at 5224.848 kb on + strand, within Echvi_4369 at 5224.917 kb on - strand at 5225.050 kb on + strand at 5225.050 kb on + strand at 5225.050 kb on + strand at 5225.073 kb on + strand, within Echvi_4370 at 5225.074 kb on - strand, within Echvi_4370 at 5225.094 kb on - strand, within Echvi_4370 at 5225.123 kb on + strand, within Echvi_4370 at 5225.123 kb on + strand, within Echvi_4370 at 5225.123 kb on + strand, within Echvi_4370 at 5225.127 kb on + strand, within Echvi_4370 at 5225.127 kb on + strand, within Echvi_4370 at 5225.292 kb on + strand, within Echvi_4370 at 5225.293 kb on - strand, within Echvi_4370 at 5225.293 kb on - strand, within Echvi_4370 at 5225.362 kb on + strand, within Echvi_4370 at 5225.363 kb on - strand, within Echvi_4370 at 5225.363 kb on - strand, within Echvi_4370 at 5225.381 kb on - strand, within Echvi_4370 at 5225.381 kb on - strand, within Echvi_4370 at 5225.399 kb on + strand, within Echvi_4370 at 5225.400 kb on - strand, within Echvi_4370 at 5225.400 kb on - strand, within Echvi_4370 at 5225.401 kb on + strand, within Echvi_4370 at 5225.414 kb on - strand at 5225.417 kb on - strand at 5225.417 kb on - strand at 5225.434 kb on + strand at 5225.462 kb on + strand at 5225.462 kb on + strand at 5225.463 kb on - strand at 5225.463 kb on - strand at 5225.463 kb on - strand at 5225.463 kb on - strand at 5225.492 kb on + strand at 5225.503 kb on - strand at 5225.553 kb on + strand at 5225.568 kb on + strand at 5225.654 kb on + strand, within Echvi_4371 at 5225.655 kb on - strand, within Echvi_4371 at 5225.736 kb on + strand, within Echvi_4371 at 5225.779 kb on + strand, within Echvi_4371 at 5225.781 kb on + strand, within Echvi_4371 at 5225.812 kb on - strand, within Echvi_4371 at 5225.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 5,223,803 + Echvi_4368 0.38 -1.6 5,223,804 - Echvi_4368 0.39 -1.2 5,223,823 + Echvi_4368 0.40 +0.1 5,223,860 - Echvi_4368 0.42 +0.5 5,223,860 - Echvi_4368 0.42 +0.1 5,223,915 - Echvi_4368 0.46 -0.0 5,223,994 + Echvi_4368 0.51 -0.1 5,223,994 + Echvi_4368 0.51 +0.7 5,224,271 - Echvi_4368 0.69 +0.9 5,224,372 + Echvi_4368 0.76 -1.2 5,224,515 - Echvi_4368 0.85 -0.9 5,224,744 - -1.8 5,224,755 + -0.5 5,224,848 + Echvi_4369 0.49 -0.8 5,224,917 - -2.4 5,225,050 + -1.0 5,225,050 + +0.2 5,225,050 + +0.5 5,225,073 + Echvi_4370 0.13 -0.5 5,225,074 - Echvi_4370 0.13 -1.2 5,225,094 - Echvi_4370 0.18 +0.4 5,225,123 + Echvi_4370 0.25 -0.7 5,225,123 + Echvi_4370 0.25 +0.3 5,225,123 + Echvi_4370 0.25 -0.4 5,225,127 + Echvi_4370 0.26 +1.8 5,225,127 + Echvi_4370 0.26 +0.2 5,225,292 + Echvi_4370 0.64 +0.5 5,225,293 - Echvi_4370 0.64 +0.8 5,225,293 - Echvi_4370 0.64 +0.2 5,225,362 + Echvi_4370 0.80 +0.6 5,225,363 - Echvi_4370 0.80 +0.7 5,225,363 - Echvi_4370 0.80 +0.2 5,225,381 - Echvi_4370 0.84 +0.1 5,225,381 - Echvi_4370 0.84 -0.0 5,225,399 + Echvi_4370 0.89 -2.7 5,225,400 - Echvi_4370 0.89 +1.5 5,225,400 - Echvi_4370 0.89 -1.2 5,225,401 + Echvi_4370 0.89 +1.2 5,225,414 - +0.1 5,225,417 - -0.2 5,225,417 - +0.1 5,225,434 + +0.4 5,225,462 + +0.6 5,225,462 + +0.9 5,225,463 - +0.0 5,225,463 - +0.2 5,225,463 - -0.8 5,225,463 - +0.1 5,225,492 + +0.3 5,225,503 - -0.1 5,225,553 + +0.3 5,225,568 + +0.1 5,225,654 + Echvi_4371 0.15 +0.4 5,225,655 - Echvi_4371 0.15 -0.0 5,225,736 + Echvi_4371 0.45 -1.6 5,225,779 + Echvi_4371 0.61 +0.2 5,225,781 + Echvi_4371 0.62 -0.8 5,225,812 - Echvi_4371 0.73 +0.2 5,225,870 - +0.1
Or see this region's nucleotide sequence