Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4046 and Echvi_4047 are separated by 163 nucleotides Echvi_4047 and Echvi_4048 are separated by 83 nucleotides Echvi_4048 and Echvi_4049 are separated by 33 nucleotides Echvi_4049 and Echvi_4050 are separated by 65 nucleotides
Echvi_4046: Echvi_4046 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,851,665 to 4,852,909
_4046
Echvi_4047: Echvi_4047 - hypothetical protein, at 4,853,073 to 4,853,267
_4047
Echvi_4048: Echvi_4048 - hypothetical protein, at 4,853,351 to 4,853,527
_4048
Echvi_4049: Echvi_4049 - Uncharacterized protein conserved in bacteria, at 4,853,561 to 4,854,013
_4049
Echvi_4050: Echvi_4050 - hypothetical protein, at 4,854,079 to 4,856,952
_4050
Position (kb) 4853
4854
4855 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4852.589 kb on + strand, within Echvi_4046 at 4852.595 kb on + strand, within Echvi_4046 at 4852.595 kb on + strand, within Echvi_4046 at 4852.595 kb on + strand, within Echvi_4046 at 4852.743 kb on - strand, within Echvi_4046 at 4852.743 kb on - strand, within Echvi_4046 at 4852.807 kb on + strand at 4852.807 kb on + strand at 4852.808 kb on - strand at 4852.808 kb on - strand at 4852.808 kb on - strand at 4852.809 kb on + strand at 4852.810 kb on - strand at 4852.810 kb on - strand at 4852.810 kb on - strand at 4852.810 kb on - strand at 4852.810 kb on - strand at 4852.811 kb on + strand at 4852.812 kb on - strand at 4852.812 kb on - strand at 4852.812 kb on - strand at 4852.812 kb on - strand at 4852.867 kb on - strand at 4853.140 kb on - strand, within Echvi_4047 at 4853.169 kb on - strand, within Echvi_4047 at 4853.193 kb on + strand, within Echvi_4047 at 4853.194 kb on - strand, within Echvi_4047 at 4853.212 kb on + strand, within Echvi_4047 at 4853.295 kb on + strand at 4853.295 kb on + strand at 4853.318 kb on + strand at 4853.318 kb on + strand at 4853.384 kb on - strand, within Echvi_4048 at 4853.578 kb on + strand at 4853.593 kb on + strand at 4853.684 kb on + strand, within Echvi_4049 at 4853.685 kb on - strand, within Echvi_4049 at 4853.702 kb on - strand, within Echvi_4049 at 4853.726 kb on + strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.774 kb on - strand, within Echvi_4049 at 4853.794 kb on + strand, within Echvi_4049 at 4853.795 kb on - strand, within Echvi_4049 at 4853.805 kb on + strand, within Echvi_4049 at 4853.871 kb on + strand, within Echvi_4049 at 4853.949 kb on - strand at 4854.003 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.011 kb on + strand at 4854.012 kb on - strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.014 kb on + strand at 4854.091 kb on + strand at 4854.463 kb on - strand, within Echvi_4050
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 4,852,589 + Echvi_4046 0.74 -1.0 4,852,595 + Echvi_4046 0.75 -0.8 4,852,595 + Echvi_4046 0.75 +0.6 4,852,595 + Echvi_4046 0.75 -0.2 4,852,743 - Echvi_4046 0.87 -0.4 4,852,743 - Echvi_4046 0.87 +0.3 4,852,807 + -0.2 4,852,807 + -0.6 4,852,808 - -0.1 4,852,808 - -0.4 4,852,808 - +2.1 4,852,809 + +0.4 4,852,810 - +0.8 4,852,810 - +0.5 4,852,810 - -0.1 4,852,810 - +0.3 4,852,810 - +0.5 4,852,811 + -0.4 4,852,812 - -0.0 4,852,812 - -0.0 4,852,812 - -1.7 4,852,812 - +0.2 4,852,867 - -0.1 4,853,140 - Echvi_4047 0.34 -0.4 4,853,169 - Echvi_4047 0.49 -0.2 4,853,193 + Echvi_4047 0.62 +0.4 4,853,194 - Echvi_4047 0.62 +0.0 4,853,212 + Echvi_4047 0.71 -2.1 4,853,295 + +0.4 4,853,295 + +0.1 4,853,318 + +0.0 4,853,318 + +0.2 4,853,384 - Echvi_4048 0.19 +0.6 4,853,578 + -0.1 4,853,593 + -2.2 4,853,684 + Echvi_4049 0.27 +0.5 4,853,685 - Echvi_4049 0.27 -1.3 4,853,702 - Echvi_4049 0.31 -0.5 4,853,726 + Echvi_4049 0.36 -0.3 4,853,774 - Echvi_4049 0.47 +1.0 4,853,774 - Echvi_4049 0.47 -0.8 4,853,774 - Echvi_4049 0.47 -1.2 4,853,794 + Echvi_4049 0.51 -0.7 4,853,795 - Echvi_4049 0.52 -1.6 4,853,805 + Echvi_4049 0.54 -0.6 4,853,871 + Echvi_4049 0.68 -1.2 4,853,949 - -0.2 4,854,003 + +1.0 4,854,011 + -1.2 4,854,011 + +1.2 4,854,011 + +0.3 4,854,011 + +1.2 4,854,011 + -1.2 4,854,012 - -0.4 4,854,014 + -0.7 4,854,014 + -0.1 4,854,014 + +0.1 4,854,014 + -0.1 4,854,091 + -1.2 4,854,463 - Echvi_4050 0.13 +0.5
Or see this region's nucleotide sequence