Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2461 and Echvi_2462 are separated by 121 nucleotides Echvi_2462 and Echvi_2463 are separated by 365 nucleotides Echvi_2463 and Echvi_2464 overlap by 4 nucleotides Echvi_2464 and Echvi_2465 are separated by 138 nucleotides
Echvi_2461: Echvi_2461 - glutamyl-tRNA reductase, at 2,921,430 to 2,922,671
_2461
Echvi_2462: Echvi_2462 - hypothetical protein, at 2,922,793 to 2,922,972
_2462
Echvi_2463: Echvi_2463 - Translation initiation factor 1 (eIF-1/SUI1) and related proteins, at 2,923,338 to 2,923,703
_2463
Echvi_2464: Echvi_2464 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,923,700 to 2,924,548
_2464
Echvi_2465: Echvi_2465 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 2,924,687 to 2,925,601
_2465
Position (kb)
2923
2924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2922.364 kb on - strand, within Echvi_2461 at 2922.374 kb on + strand, within Echvi_2461 at 2922.374 kb on + strand, within Echvi_2461 at 2922.375 kb on - strand, within Echvi_2461 at 2922.381 kb on + strand, within Echvi_2461 at 2922.382 kb on - strand, within Echvi_2461 at 2922.475 kb on + strand, within Echvi_2461 at 2922.546 kb on + strand, within Echvi_2461 at 2922.555 kb on + strand at 2922.651 kb on + strand at 2922.651 kb on + strand at 2922.652 kb on - strand at 2922.652 kb on - strand at 2922.671 kb on + strand at 2922.701 kb on + strand at 2922.701 kb on + strand at 2922.701 kb on + strand at 2922.739 kb on - strand at 2922.739 kb on - strand at 2922.739 kb on - strand at 2922.739 kb on - strand at 2922.739 kb on - strand at 2922.804 kb on + strand at 2922.804 kb on + strand at 2922.875 kb on + strand, within Echvi_2462 at 2922.880 kb on - strand, within Echvi_2462 at 2922.886 kb on + strand, within Echvi_2462 at 2922.919 kb on + strand, within Echvi_2462 at 2922.919 kb on + strand, within Echvi_2462 at 2922.919 kb on + strand, within Echvi_2462 at 2922.919 kb on + strand, within Echvi_2462 at 2922.920 kb on - strand, within Echvi_2462 at 2922.920 kb on - strand, within Echvi_2462 at 2922.920 kb on - strand, within Echvi_2462 at 2922.962 kb on - strand at 2922.965 kb on - strand at 2922.965 kb on - strand at 2922.970 kb on + strand at 2922.995 kb on + strand at 2922.995 kb on + strand at 2922.996 kb on - strand at 2922.996 kb on - strand at 2923.009 kb on - strand at 2923.009 kb on - strand at 2923.076 kb on + strand at 2923.187 kb on + strand at 2923.199 kb on - strand at 2923.206 kb on + strand at 2923.207 kb on - strand at 2923.241 kb on + strand at 2923.241 kb on + strand at 2923.364 kb on - strand at 2923.464 kb on + strand, within Echvi_2463 at 2923.485 kb on + strand, within Echvi_2463 at 2923.622 kb on - strand, within Echvi_2463 at 2923.645 kb on + strand, within Echvi_2463 at 2923.757 kb on + strand at 2923.758 kb on - strand at 2923.758 kb on - strand at 2923.759 kb on + strand at 2923.760 kb on - strand at 2923.811 kb on + strand, within Echvi_2464 at 2923.888 kb on + strand, within Echvi_2464 at 2923.888 kb on + strand, within Echvi_2464 at 2924.168 kb on + strand, within Echvi_2464 at 2924.253 kb on + strand, within Echvi_2464 at 2924.276 kb on - strand, within Echvi_2464 at 2924.287 kb on + strand, within Echvi_2464 at 2924.287 kb on + strand, within Echvi_2464 at 2924.287 kb on + strand, within Echvi_2464 at 2924.287 kb on + strand, within Echvi_2464 at 2924.288 kb on - strand, within Echvi_2464 at 2924.288 kb on - strand, within Echvi_2464 at 2924.288 kb on - strand, within Echvi_2464 at 2924.290 kb on - strand, within Echvi_2464 at 2924.453 kb on + strand, within Echvi_2464 at 2924.453 kb on + strand, within Echvi_2464 at 2924.454 kb on - strand, within Echvi_2464 at 2924.454 kb on - strand, within Echvi_2464 at 2924.548 kb on + strand at 2924.548 kb on + strand at 2924.565 kb on + strand at 2924.603 kb on + strand at 2924.625 kb on - strand at 2924.627 kb on + strand at 2924.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,922,364 - Echvi_2461 0.75 -0.7 2,922,374 + Echvi_2461 0.76 -1.1 2,922,374 + Echvi_2461 0.76 -0.5 2,922,375 - Echvi_2461 0.76 +1.0 2,922,381 + Echvi_2461 0.77 +0.2 2,922,382 - Echvi_2461 0.77 -1.5 2,922,475 + Echvi_2461 0.84 -0.3 2,922,546 + Echvi_2461 0.90 -0.3 2,922,555 + +0.3 2,922,651 + -0.0 2,922,651 + +1.1 2,922,652 - -0.6 2,922,652 - -0.4 2,922,671 + +1.0 2,922,701 + +0.1 2,922,701 + -0.9 2,922,701 + -1.3 2,922,739 - -0.3 2,922,739 - -0.3 2,922,739 - +0.7 2,922,739 - -2.0 2,922,739 - +0.0 2,922,804 + +1.6 2,922,804 + -0.1 2,922,875 + Echvi_2462 0.46 +1.1 2,922,880 - Echvi_2462 0.48 +2.8 2,922,886 + Echvi_2462 0.52 -0.2 2,922,919 + Echvi_2462 0.70 -1.8 2,922,919 + Echvi_2462 0.70 +0.3 2,922,919 + Echvi_2462 0.70 -0.9 2,922,919 + Echvi_2462 0.70 -0.3 2,922,920 - Echvi_2462 0.71 -0.5 2,922,920 - Echvi_2462 0.71 -0.5 2,922,920 - Echvi_2462 0.71 +0.5 2,922,962 - -1.3 2,922,965 - -1.3 2,922,965 - +0.2 2,922,970 + +0.1 2,922,995 + -0.8 2,922,995 + -0.8 2,922,996 - +0.0 2,922,996 - -0.3 2,923,009 - +2.1 2,923,009 - +0.5 2,923,076 + -1.3 2,923,187 + -0.3 2,923,199 - +0.4 2,923,206 + +0.1 2,923,207 - -0.1 2,923,241 + +0.5 2,923,241 + -0.3 2,923,364 - +0.2 2,923,464 + Echvi_2463 0.34 -1.4 2,923,485 + Echvi_2463 0.40 +0.5 2,923,622 - Echvi_2463 0.78 -0.5 2,923,645 + Echvi_2463 0.84 -1.8 2,923,757 + -0.4 2,923,758 - +0.4 2,923,758 - +0.7 2,923,759 + -2.1 2,923,760 - -0.4 2,923,811 + Echvi_2464 0.13 -0.2 2,923,888 + Echvi_2464 0.22 +1.8 2,923,888 + Echvi_2464 0.22 -0.4 2,924,168 + Echvi_2464 0.55 -0.1 2,924,253 + Echvi_2464 0.65 +0.4 2,924,276 - Echvi_2464 0.68 -1.5 2,924,287 + Echvi_2464 0.69 -0.3 2,924,287 + Echvi_2464 0.69 -2.1 2,924,287 + Echvi_2464 0.69 -0.2 2,924,287 + Echvi_2464 0.69 +0.2 2,924,288 - Echvi_2464 0.69 -0.0 2,924,288 - Echvi_2464 0.69 -0.4 2,924,288 - Echvi_2464 0.69 +1.2 2,924,290 - Echvi_2464 0.69 +0.7 2,924,453 + Echvi_2464 0.89 -1.2 2,924,453 + Echvi_2464 0.89 +0.2 2,924,454 - Echvi_2464 0.89 -0.2 2,924,454 - Echvi_2464 0.89 +0.3 2,924,548 + -0.8 2,924,548 + -0.6 2,924,565 + -0.1 2,924,603 + -0.6 2,924,625 - -1.4 2,924,627 + -0.4 2,924,628 - +0.3
Or see this region's nucleotide sequence