Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2463

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2461 and Echvi_2462 are separated by 121 nucleotidesEchvi_2462 and Echvi_2463 are separated by 365 nucleotidesEchvi_2463 and Echvi_2464 overlap by 4 nucleotidesEchvi_2464 and Echvi_2465 are separated by 138 nucleotides Echvi_2461: Echvi_2461 - glutamyl-tRNA reductase, at 2,921,430 to 2,922,671 _2461 Echvi_2462: Echvi_2462 - hypothetical protein, at 2,922,793 to 2,922,972 _2462 Echvi_2463: Echvi_2463 - Translation initiation factor 1 (eIF-1/SUI1) and related proteins, at 2,923,338 to 2,923,703 _2463 Echvi_2464: Echvi_2464 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,923,700 to 2,924,548 _2464 Echvi_2465: Echvi_2465 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 2,924,687 to 2,925,601 _2465 Position (kb) 2923 2924Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2922.364 kb on - strand, within Echvi_2461at 2922.374 kb on + strand, within Echvi_2461at 2922.374 kb on + strand, within Echvi_2461at 2922.375 kb on - strand, within Echvi_2461at 2922.381 kb on + strand, within Echvi_2461at 2922.382 kb on - strand, within Echvi_2461at 2922.475 kb on + strand, within Echvi_2461at 2922.546 kb on + strand, within Echvi_2461at 2922.555 kb on + strandat 2922.651 kb on + strandat 2922.651 kb on + strandat 2922.652 kb on - strandat 2922.652 kb on - strandat 2922.671 kb on + strandat 2922.701 kb on + strandat 2922.701 kb on + strandat 2922.701 kb on + strandat 2922.739 kb on - strandat 2922.739 kb on - strandat 2922.739 kb on - strandat 2922.739 kb on - strandat 2922.739 kb on - strandat 2922.804 kb on + strandat 2922.804 kb on + strandat 2922.875 kb on + strand, within Echvi_2462at 2922.880 kb on - strand, within Echvi_2462at 2922.886 kb on + strand, within Echvi_2462at 2922.919 kb on + strand, within Echvi_2462at 2922.919 kb on + strand, within Echvi_2462at 2922.919 kb on + strand, within Echvi_2462at 2922.919 kb on + strand, within Echvi_2462at 2922.920 kb on - strand, within Echvi_2462at 2922.920 kb on - strand, within Echvi_2462at 2922.920 kb on - strand, within Echvi_2462at 2922.962 kb on - strandat 2922.965 kb on - strandat 2922.965 kb on - strandat 2922.970 kb on + strandat 2922.995 kb on + strandat 2922.995 kb on + strandat 2922.996 kb on - strandat 2922.996 kb on - strandat 2923.009 kb on - strandat 2923.009 kb on - strandat 2923.076 kb on + strandat 2923.187 kb on + strandat 2923.199 kb on - strandat 2923.206 kb on + strandat 2923.207 kb on - strandat 2923.241 kb on + strandat 2923.241 kb on + strandat 2923.364 kb on - strandat 2923.464 kb on + strand, within Echvi_2463at 2923.485 kb on + strand, within Echvi_2463at 2923.622 kb on - strand, within Echvi_2463at 2923.645 kb on + strand, within Echvi_2463at 2923.757 kb on + strandat 2923.758 kb on - strandat 2923.758 kb on - strandat 2923.759 kb on + strandat 2923.760 kb on - strandat 2923.811 kb on + strand, within Echvi_2464at 2923.888 kb on + strand, within Echvi_2464at 2923.888 kb on + strand, within Echvi_2464at 2924.168 kb on + strand, within Echvi_2464at 2924.253 kb on + strand, within Echvi_2464at 2924.276 kb on - strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.287 kb on + strand, within Echvi_2464at 2924.288 kb on - strand, within Echvi_2464at 2924.288 kb on - strand, within Echvi_2464at 2924.288 kb on - strand, within Echvi_2464at 2924.290 kb on - strand, within Echvi_2464at 2924.453 kb on + strand, within Echvi_2464at 2924.453 kb on + strand, within Echvi_2464at 2924.454 kb on - strand, within Echvi_2464at 2924.454 kb on - strand, within Echvi_2464at 2924.548 kb on + strandat 2924.548 kb on + strandat 2924.565 kb on + strandat 2924.603 kb on + strandat 2924.625 kb on - strandat 2924.627 kb on + strandat 2924.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,922,364 - Echvi_2461 0.75 -0.7
2,922,374 + Echvi_2461 0.76 -1.1
2,922,374 + Echvi_2461 0.76 -0.5
2,922,375 - Echvi_2461 0.76 +1.0
2,922,381 + Echvi_2461 0.77 +0.2
2,922,382 - Echvi_2461 0.77 -1.5
2,922,475 + Echvi_2461 0.84 -0.3
2,922,546 + Echvi_2461 0.90 -0.3
2,922,555 + +0.3
2,922,651 + -0.0
2,922,651 + +1.1
2,922,652 - -0.6
2,922,652 - -0.4
2,922,671 + +1.0
2,922,701 + +0.1
2,922,701 + -0.9
2,922,701 + -1.3
2,922,739 - -0.3
2,922,739 - -0.3
2,922,739 - +0.7
2,922,739 - -2.0
2,922,739 - +0.0
2,922,804 + +1.6
2,922,804 + -0.1
2,922,875 + Echvi_2462 0.46 +1.1
2,922,880 - Echvi_2462 0.48 +2.8
2,922,886 + Echvi_2462 0.52 -0.2
2,922,919 + Echvi_2462 0.70 -1.8
2,922,919 + Echvi_2462 0.70 +0.3
2,922,919 + Echvi_2462 0.70 -0.9
2,922,919 + Echvi_2462 0.70 -0.3
2,922,920 - Echvi_2462 0.71 -0.5
2,922,920 - Echvi_2462 0.71 -0.5
2,922,920 - Echvi_2462 0.71 +0.5
2,922,962 - -1.3
2,922,965 - -1.3
2,922,965 - +0.2
2,922,970 + +0.1
2,922,995 + -0.8
2,922,995 + -0.8
2,922,996 - +0.0
2,922,996 - -0.3
2,923,009 - +2.1
2,923,009 - +0.5
2,923,076 + -1.3
2,923,187 + -0.3
2,923,199 - +0.4
2,923,206 + +0.1
2,923,207 - -0.1
2,923,241 + +0.5
2,923,241 + -0.3
2,923,364 - +0.2
2,923,464 + Echvi_2463 0.34 -1.4
2,923,485 + Echvi_2463 0.40 +0.5
2,923,622 - Echvi_2463 0.78 -0.5
2,923,645 + Echvi_2463 0.84 -1.8
2,923,757 + -0.4
2,923,758 - +0.4
2,923,758 - +0.7
2,923,759 + -2.1
2,923,760 - -0.4
2,923,811 + Echvi_2464 0.13 -0.2
2,923,888 + Echvi_2464 0.22 +1.8
2,923,888 + Echvi_2464 0.22 -0.4
2,924,168 + Echvi_2464 0.55 -0.1
2,924,253 + Echvi_2464 0.65 +0.4
2,924,276 - Echvi_2464 0.68 -1.5
2,924,287 + Echvi_2464 0.69 -0.3
2,924,287 + Echvi_2464 0.69 -2.1
2,924,287 + Echvi_2464 0.69 -0.2
2,924,287 + Echvi_2464 0.69 +0.2
2,924,288 - Echvi_2464 0.69 -0.0
2,924,288 - Echvi_2464 0.69 -0.4
2,924,288 - Echvi_2464 0.69 +1.2
2,924,290 - Echvi_2464 0.69 +0.7
2,924,453 + Echvi_2464 0.89 -1.2
2,924,453 + Echvi_2464 0.89 +0.2
2,924,454 - Echvi_2464 0.89 -0.2
2,924,454 - Echvi_2464 0.89 +0.3
2,924,548 + -0.8
2,924,548 + -0.6
2,924,565 + -0.1
2,924,603 + -0.6
2,924,625 - -1.4
2,924,627 + -0.4
2,924,628 - +0.3

Or see this region's nucleotide sequence