Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0782

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0780 and Echvi_0781 are separated by 3 nucleotidesEchvi_0781 and Echvi_0782 are separated by 2 nucleotidesEchvi_0782 and Echvi_0783 are separated by 287 nucleotides Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808 _0780 Echvi_0781: Echvi_0781 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 881,812 to 882,603 _0781 Echvi_0782: Echvi_0782 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 882,606 to 883,526 _0782 Echvi_0783: Echvi_0783 - hypothetical protein, at 883,814 to 885,331 _0783 Position (kb) 882 883 884Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 881.809 kb on + strandat 881.811 kb on + strandat 881.811 kb on + strandat 881.817 kb on + strandat 881.817 kb on + strandat 881.817 kb on + strandat 881.818 kb on - strandat 881.846 kb on + strandat 881.846 kb on + strandat 881.869 kb on + strandat 881.869 kb on + strandat 881.869 kb on + strandat 881.870 kb on - strandat 881.870 kb on - strandat 881.874 kb on - strandat 881.920 kb on + strand, within Echvi_0781at 881.923 kb on + strand, within Echvi_0781at 881.923 kb on + strand, within Echvi_0781at 881.925 kb on + strand, within Echvi_0781at 881.974 kb on - strand, within Echvi_0781at 882.006 kb on + strand, within Echvi_0781at 882.007 kb on - strand, within Echvi_0781at 882.017 kb on + strand, within Echvi_0781at 882.017 kb on + strand, within Echvi_0781at 882.022 kb on - strand, within Echvi_0781at 882.022 kb on - strand, within Echvi_0781at 882.069 kb on + strand, within Echvi_0781at 882.109 kb on + strand, within Echvi_0781at 882.110 kb on - strand, within Echvi_0781at 882.121 kb on - strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.217 kb on + strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.218 kb on - strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.219 kb on + strand, within Echvi_0781at 882.232 kb on - strand, within Echvi_0781at 882.239 kb on - strand, within Echvi_0781at 882.283 kb on + strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.284 kb on - strand, within Echvi_0781at 882.337 kb on - strand, within Echvi_0781at 882.347 kb on + strand, within Echvi_0781at 882.348 kb on - strand, within Echvi_0781at 882.452 kb on - strand, within Echvi_0781at 882.476 kb on - strand, within Echvi_0781at 882.482 kb on + strand, within Echvi_0781at 882.483 kb on - strand, within Echvi_0781at 882.483 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.485 kb on - strand, within Echvi_0781at 882.486 kb on + strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.487 kb on - strand, within Echvi_0781at 882.489 kb on + strand, within Echvi_0781at 882.489 kb on + strand, within Echvi_0781at 882.490 kb on - strand, within Echvi_0781at 882.490 kb on - strand, within Echvi_0781at 882.492 kb on + strand, within Echvi_0781at 882.492 kb on + strand, within Echvi_0781at 882.493 kb on - strand, within Echvi_0781at 882.538 kb on - strandat 882.545 kb on + strandat 882.550 kb on - strandat 882.609 kb on + strandat 882.610 kb on - strandat 882.627 kb on + strandat 882.627 kb on + strandat 882.667 kb on - strandat 882.717 kb on - strand, within Echvi_0782at 882.776 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.827 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strandat 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.831 kb on + strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.832 kb on - strand, within Echvi_0782at 882.839 kb on + strand, within Echvi_0782at 882.884 kb on - strand, within Echvi_0782at 882.884 kb on - strand, within Echvi_0782at 882.885 kb on + strand, within Echvi_0782at 882.886 kb on - strand, within Echvi_0782at 882.913 kb on - strand, within Echvi_0782at 882.942 kb on + strand, within Echvi_0782at 882.942 kb on + strand, within Echvi_0782at 882.942 kb on + strand, within Echvi_0782at 882.943 kb on - strand, within Echvi_0782at 882.976 kb on - strand, within Echvi_0782at 882.976 kb on - strand, within Echvi_0782at 882.987 kb on + strand, within Echvi_0782at 882.988 kb on - strand, within Echvi_0782at 882.988 kb on - strand, within Echvi_0782at 882.995 kb on - strand, within Echvi_0782at 883.009 kb on + strand, within Echvi_0782at 883.009 kb on + strand, within Echvi_0782at 883.009 kb on + strand, within Echvi_0782at 883.010 kb on - strand, within Echvi_0782at 883.056 kb on + strand, within Echvi_0782at 883.146 kb on - strand, within Echvi_0782at 883.147 kb on + strand, within Echvi_0782at 883.148 kb on - strand, within Echvi_0782at 883.153 kb on - strand, within Echvi_0782at 883.228 kb on + strand, within Echvi_0782at 883.233 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.237 kb on + strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.238 kb on - strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.239 kb on + strand, within Echvi_0782at 883.240 kb on - strand, within Echvi_0782at 883.240 kb on - strand, within Echvi_0782at 883.365 kb on + strand, within Echvi_0782at 883.366 kb on - strand, within Echvi_0782at 883.366 kb on - strand, within Echvi_0782at 883.520 kb on + strandat 883.521 kb on - strandat 883.521 kb on - strandat 883.524 kb on + strandat 883.524 kb on + strandat 883.524 kb on + strandat 883.525 kb on - strandat 883.528 kb on - strandat 883.528 kb on - strandat 883.530 kb on + strandat 883.530 kb on + strandat 883.530 kb on + strandat 883.530 kb on + strandat 883.534 kb on + strandat 883.542 kb on - strandat 883.542 kb on - strandat 883.542 kb on - strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.545 kb on + strandat 883.546 kb on - strandat 883.546 kb on - strandat 883.546 kb on - strandat 883.549 kb on - strandat 883.647 kb on - strandat 883.647 kb on - strandat 883.687 kb on + strandat 883.707 kb on - strandat 883.707 kb on - strandat 883.820 kb on + strandat 883.822 kb on + strandat 883.836 kb on + strandat 883.901 kb on + strandat 883.901 kb on + strandat 883.901 kb on + strandat 883.901 kb on + strandat 883.938 kb on + strandat 883.960 kb on - strandat 883.975 kb on + strand, within Echvi_0783at 883.976 kb on - strand, within Echvi_0783at 884.084 kb on - strand, within Echvi_0783at 884.090 kb on - strand, within Echvi_0783at 884.093 kb on + strand, within Echvi_0783at 884.093 kb on + strand, within Echvi_0783at 884.094 kb on - strand, within Echvi_0783at 884.094 kb on - strand, within Echvi_0783at 884.163 kb on + strand, within Echvi_0783at 884.163 kb on + strand, within Echvi_0783at 884.163 kb on + strand, within Echvi_0783at 884.164 kb on - strand, within Echvi_0783at 884.164 kb on - strand, within Echvi_0783at 884.164 kb on - strand, within Echvi_0783at 884.200 kb on - strand, within Echvi_0783at 884.200 kb on - strand, within Echvi_0783at 884.200 kb on - strand, within Echvi_0783at 884.214 kb on + strand, within Echvi_0783at 884.214 kb on + strand, within Echvi_0783at 884.215 kb on - strand, within Echvi_0783at 884.282 kb on + strand, within Echvi_0783at 884.283 kb on - strand, within Echvi_0783at 884.283 kb on - strand, within Echvi_0783at 884.301 kb on + strand, within Echvi_0783at 884.301 kb on + strand, within Echvi_0783at 884.302 kb on - strand, within Echvi_0783at 884.418 kb on + strand, within Echvi_0783at 884.419 kb on - strand, within Echvi_0783at 884.433 kb on - strand, within Echvi_0783at 884.443 kb on + strand, within Echvi_0783

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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881,809 + -2.2
881,811 + -1.5
881,811 + -0.9
881,817 + -2.7
881,817 + -2.0
881,817 + -1.2
881,818 - +0.2
881,846 + -0.5
881,846 + -1.1
881,869 + +0.7
881,869 + -0.1
881,869 + -0.6
881,870 - +0.5
881,870 - -0.7
881,874 - +2.3
881,920 + Echvi_0781 0.14 -0.3
881,923 + Echvi_0781 0.14 +0.9
881,923 + Echvi_0781 0.14 -1.1
881,925 + Echvi_0781 0.14 -2.4
881,974 - Echvi_0781 0.20 +1.7
882,006 + Echvi_0781 0.24 -3.1
882,007 - Echvi_0781 0.25 +1.3
882,017 + Echvi_0781 0.26 -2.0
882,017 + Echvi_0781 0.26 -1.1
882,022 - Echvi_0781 0.27 +2.1
882,022 - Echvi_0781 0.27 +0.2
882,069 + Echvi_0781 0.32 -2.6
882,109 + Echvi_0781 0.38 -0.6
882,110 - Echvi_0781 0.38 +0.3
882,121 - Echvi_0781 0.39 +0.7
882,217 + Echvi_0781 0.51 -4.0
882,217 + Echvi_0781 0.51 -3.5
882,217 + Echvi_0781 0.51 -2.9
882,217 + Echvi_0781 0.51 -5.3
882,217 + Echvi_0781 0.51 -2.6
882,217 + Echvi_0781 0.51 -1.6
882,217 + Echvi_0781 0.51 -0.6
882,218 - Echvi_0781 0.51 +0.1
882,218 - Echvi_0781 0.51 -0.5
882,218 - Echvi_0781 0.51 -0.7
882,218 - Echvi_0781 0.51 +1.2
882,219 + Echvi_0781 0.51 -2.5
882,219 + Echvi_0781 0.51 -3.4
882,219 + Echvi_0781 0.51 -1.1
882,219 + Echvi_0781 0.51 -2.3
882,219 + Echvi_0781 0.51 -3.0
882,219 + Echvi_0781 0.51 -3.3
882,232 - Echvi_0781 0.53 +0.4
882,239 - Echvi_0781 0.54 +1.2
882,283 + Echvi_0781 0.59 -3.0
882,284 - Echvi_0781 0.60 +0.3
882,284 - Echvi_0781 0.60 -0.4
882,284 - Echvi_0781 0.60 -0.1
882,337 - Echvi_0781 0.66 +0.5
882,347 + Echvi_0781 0.68 -5.5
882,348 - Echvi_0781 0.68 -0.6
882,452 - Echvi_0781 0.81 +0.6
882,476 - Echvi_0781 0.84 +0.9
882,482 + Echvi_0781 0.85 -3.9
882,483 - Echvi_0781 0.85 -0.7
882,483 - Echvi_0781 0.85 +0.4
882,485 - Echvi_0781 0.85 +1.1
882,485 - Echvi_0781 0.85 +1.1
882,485 - Echvi_0781 0.85 +2.2
882,486 + Echvi_0781 0.85 -2.7
882,487 - Echvi_0781 0.85 +0.0
882,487 - Echvi_0781 0.85 +1.5
882,487 - Echvi_0781 0.85 +1.1
882,487 - Echvi_0781 0.85 -1.3
882,489 + Echvi_0781 0.85 -3.3
882,489 + Echvi_0781 0.85 -4.6
882,490 - Echvi_0781 0.86 +1.1
882,490 - Echvi_0781 0.86 +0.0
882,492 + Echvi_0781 0.86 -2.4
882,492 + Echvi_0781 0.86 -2.6
882,493 - Echvi_0781 0.86 +0.9
882,538 - +1.3
882,545 + -2.4
882,550 - -0.4
882,609 + +1.4
882,610 - +1.3
882,627 + +0.9
882,627 + +2.2
882,667 - +0.7
882,717 - Echvi_0782 0.12 +1.0
882,776 + Echvi_0782 0.18 +1.7
882,827 + Echvi_0782 0.24 +0.4
882,827 + Echvi_0782 0.24 +0.2
882,827 + Echvi_0782 0.24 +1.5
882,827 + Echvi_0782 0.24 +0.7
882,831 + Echvi_0782 0.24 +0.9
882,831 + Echvi_0782 0.24 +0.9
882,831 + Echvi_0782 0.24 +0.1
882,831 + Echvi_0782 0.24 +1.1
882,831 + +1.7
882,831 + Echvi_0782 0.24 +1.7
882,831 + Echvi_0782 0.24 +0.7
882,831 + Echvi_0782 0.24 +1.7
882,832 - Echvi_0782 0.25 +1.1
882,832 - Echvi_0782 0.25 +1.2
882,832 - Echvi_0782 0.25 +0.8
882,832 - Echvi_0782 0.25 +2.3
882,839 + Echvi_0782 0.25 +1.3
882,884 - Echvi_0782 0.30 +0.5
882,884 - Echvi_0782 0.30 +0.9
882,885 + Echvi_0782 0.30 +0.6
882,886 - Echvi_0782 0.30 +1.1
882,913 - Echvi_0782 0.33 +2.2
882,942 + Echvi_0782 0.36 +0.4
882,942 + Echvi_0782 0.36 +1.5
882,942 + Echvi_0782 0.36 +1.9
882,943 - Echvi_0782 0.37 +0.5
882,976 - Echvi_0782 0.40 +2.3
882,976 - Echvi_0782 0.40 +1.9
882,987 + Echvi_0782 0.41 +1.0
882,988 - Echvi_0782 0.41 +0.0
882,988 - Echvi_0782 0.41 +0.9
882,995 - Echvi_0782 0.42 +0.1
883,009 + Echvi_0782 0.44 +1.2
883,009 + Echvi_0782 0.44 +0.3
883,009 + Echvi_0782 0.44 -0.1
883,010 - Echvi_0782 0.44 +0.7
883,056 + Echvi_0782 0.49 +1.1
883,146 - Echvi_0782 0.59 +0.9
883,147 + Echvi_0782 0.59 +1.5
883,148 - Echvi_0782 0.59 +1.1
883,153 - Echvi_0782 0.59 +1.2
883,228 + Echvi_0782 0.68 -1.2
883,233 + Echvi_0782 0.68 +0.9
883,237 + Echvi_0782 0.69 +0.6
883,237 + Echvi_0782 0.69 +1.1
883,237 + Echvi_0782 0.69 +2.1
883,237 + Echvi_0782 0.69 -0.6
883,237 + Echvi_0782 0.69 +1.9
883,237 + Echvi_0782 0.69 +1.7
883,237 + Echvi_0782 0.69 +0.4
883,238 - Echvi_0782 0.69 +1.3
883,238 - Echvi_0782 0.69 -1.7
883,238 - Echvi_0782 0.69 +1.5
883,238 - Echvi_0782 0.69 +1.5
883,238 - Echvi_0782 0.69 -0.6
883,238 - Echvi_0782 0.69 +0.9
883,239 + Echvi_0782 0.69 +0.8
883,239 + Echvi_0782 0.69 -0.0
883,239 + Echvi_0782 0.69 +0.5
883,239 + Echvi_0782 0.69 +2.0
883,239 + Echvi_0782 0.69 +1.3
883,240 - Echvi_0782 0.69 +2.1
883,240 - Echvi_0782 0.69 -0.1
883,365 + Echvi_0782 0.82 +1.4
883,366 - Echvi_0782 0.83 +0.8
883,366 - Echvi_0782 0.83 +1.0
883,520 + +4.1
883,521 - +1.9
883,521 - +1.0
883,524 + +0.5
883,524 + -0.3
883,524 + -0.6
883,525 - -0.2
883,528 - +0.3
883,528 - +0.1
883,530 + +0.1
883,530 + +0.2
883,530 + +0.7
883,530 + -0.9
883,534 + +0.8
883,542 - +0.5
883,542 - +0.8
883,542 - +0.4
883,545 + +0.3
883,545 + +0.0
883,545 + -1.3
883,545 + -0.0
883,545 + +0.7
883,546 - -0.6
883,546 - -0.3
883,546 - +0.7
883,549 - -0.9
883,647 - -0.2
883,647 - +0.4
883,687 + +0.4
883,707 - +0.4
883,707 - +0.7
883,820 + -1.1
883,822 + +0.4
883,836 + -0.4
883,901 + -0.3
883,901 + -0.1
883,901 + +1.4
883,901 + -0.9
883,938 + +0.5
883,960 - -0.6
883,975 + Echvi_0783 0.11 +0.7
883,976 - Echvi_0783 0.11 +1.7
884,084 - Echvi_0783 0.18 -0.9
884,090 - Echvi_0783 0.18 +0.1
884,093 + Echvi_0783 0.18 -0.6
884,093 + Echvi_0783 0.18 -0.3
884,094 - Echvi_0783 0.18 +0.2
884,094 - Echvi_0783 0.18 -0.9
884,163 + Echvi_0783 0.23 -1.2
884,163 + Echvi_0783 0.23 -1.1
884,163 + Echvi_0783 0.23 +0.5
884,164 - Echvi_0783 0.23 +0.4
884,164 - Echvi_0783 0.23 +1.7
884,164 - Echvi_0783 0.23 +1.0
884,200 - Echvi_0783 0.25 -2.2
884,200 - Echvi_0783 0.25 -1.4
884,200 - Echvi_0783 0.25 +0.3
884,214 + Echvi_0783 0.26 -0.7
884,214 + Echvi_0783 0.26 -1.4
884,215 - Echvi_0783 0.26 +0.1
884,282 + Echvi_0783 0.31 +1.1
884,283 - Echvi_0783 0.31 -0.3
884,283 - Echvi_0783 0.31 +0.8
884,301 + Echvi_0783 0.32 +0.3
884,301 + Echvi_0783 0.32 -0.2
884,302 - Echvi_0783 0.32 -0.3
884,418 + Echvi_0783 0.40 +0.7
884,419 - Echvi_0783 0.40 +0.1
884,433 - Echvi_0783 0.41 +0.8
884,443 + Echvi_0783 0.41 +0.1

Or see this region's nucleotide sequence