Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0778 and Echvi_0779 are separated by 185 nucleotides Echvi_0779 and Echvi_0780 overlap by 8 nucleotides
Echvi_0778: Echvi_0778 - Beta-glucosidase-related glycosidases, at 876,370 to 879,342
_0778
Echvi_0779: Echvi_0779 - hypothetical protein, at 879,528 to 879,944
_0779
Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808
_0780
Position (kb) 879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 878.574 kb on + strand, within Echvi_0778 at 878.628 kb on + strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.715 kb on - strand, within Echvi_0778 at 878.873 kb on + strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 879.005 kb on + strand, within Echvi_0778 at 879.006 kb on - strand, within Echvi_0778 at 879.008 kb on + strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.052 kb on + strand at 879.212 kb on + strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.275 kb on - strand at 879.275 kb on - strand at 879.366 kb on + strand at 879.367 kb on - strand at 879.378 kb on + strand at 879.386 kb on + strand at 879.429 kb on + strand at 879.435 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.456 kb on + strand at 879.456 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.497 kb on + strand at 879.497 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.544 kb on + strand at 879.591 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.737 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.868 kb on - strand, within Echvi_0779 at 879.879 kb on + strand, within Echvi_0779 at 879.914 kb on + strand at 879.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 878,574 + Echvi_0778 0.74 -1.6 878,628 + Echvi_0778 0.76 +0.3 878,629 - Echvi_0778 0.76 +0.8 878,629 - Echvi_0778 0.76 -0.9 878,629 - Echvi_0778 0.76 -0.4 878,712 + Echvi_0778 0.79 -1.2 878,712 + Echvi_0778 0.79 +0.7 878,713 - Echvi_0778 0.79 +0.1 878,713 - Echvi_0778 0.79 +0.1 878,715 - Echvi_0778 0.79 -0.7 878,873 + Echvi_0778 0.84 -1.3 878,874 - Echvi_0778 0.84 -0.1 878,874 - Echvi_0778 0.84 +0.7 879,005 + Echvi_0778 0.89 -1.4 879,006 - Echvi_0778 0.89 +0.0 879,008 + Echvi_0778 0.89 -0.1 879,009 - Echvi_0778 0.89 -0.5 879,009 - Echvi_0778 0.89 -0.9 879,009 - Echvi_0778 0.89 -1.7 879,052 + -0.1 879,212 + -1.1 879,213 - -3.2 879,213 - -0.2 879,213 - -0.3 879,275 - +0.3 879,275 - +0.7 879,366 + -2.7 879,367 - -0.1 879,378 + -2.2 879,386 + -3.8 879,429 + -2.7 879,435 + -2.7 879,447 + -1.4 879,447 + -2.1 879,447 + -0.4 879,456 + -0.9 879,456 + -0.9 879,491 + -0.9 879,491 + +0.5 879,491 + -2.6 879,491 + -2.1 879,497 + -1.6 879,497 + -2.4 879,502 + -3.1 879,502 + +0.4 879,502 + -1.7 879,502 + +0.4 879,544 + -0.1 879,591 + Echvi_0779 0.15 +0.9 879,686 + Echvi_0779 0.38 -0.9 879,686 + Echvi_0779 0.38 +1.3 879,737 + Echvi_0779 0.50 +0.5 879,846 + Echvi_0779 0.76 +0.6 879,846 + Echvi_0779 0.76 -0.3 879,846 + Echvi_0779 0.76 -1.1 879,865 + Echvi_0779 0.81 -0.6 879,865 + Echvi_0779 0.81 -0.6 879,866 - Echvi_0779 0.81 +0.1 879,866 - Echvi_0779 0.81 +0.7 879,867 + Echvi_0779 0.81 -2.0 879,867 + Echvi_0779 0.81 -2.2 879,867 + Echvi_0779 0.81 -1.4 879,868 - Echvi_0779 0.82 +0.6 879,879 + Echvi_0779 0.84 -1.6 879,914 + -1.9 879,914 + -1.2
Or see this region's nucleotide sequence