Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0457 and Echvi_0458 overlap by 4 nucleotides Echvi_0458 and Echvi_0459 are separated by 214 nucleotides Echvi_0459 and Echvi_0460 are separated by 94 nucleotides Echvi_0460 and Echvi_0461 are separated by 14 nucleotides
Echvi_0457: Echvi_0457 - Domain of unknown function (DUF1814)., at 500,842 to 501,897
_0457
Echvi_0458: Echvi_0458 - hypothetical protein, at 501,894 to 502,664
_0458
Echvi_0459: Echvi_0459 - Fic/DOC family., at 502,879 to 503,850
_0459
Echvi_0460: Echvi_0460 - hypothetical protein, at 503,945 to 504,829
_0460
Echvi_0461: Echvi_0461 - Site-specific recombinase XerD, at 504,844 to 505,023
_0461
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 501.893 kb on - strand at 501.901 kb on - strand at 501.924 kb on - strand at 502.843 kb on - strand at 502.863 kb on + strand at 502.863 kb on + strand at 502.863 kb on + strand at 502.863 kb on + strand at 502.863 kb on + strand at 502.863 kb on + strand at 502.867 kb on + strand at 502.884 kb on + strand at 502.884 kb on + strand at 502.884 kb on + strand at 502.895 kb on - strand at 503.068 kb on - strand, within Echvi_0459 at 503.265 kb on - strand, within Echvi_0459 at 503.286 kb on + strand, within Echvi_0459 at 503.286 kb on + strand, within Echvi_0459 at 503.334 kb on - strand, within Echvi_0459 at 504.094 kb on + strand, within Echvi_0460 at 504.503 kb on + strand, within Echvi_0460 at 504.530 kb on + strand, within Echvi_0460 at 504.532 kb on + strand, within Echvi_0460 at 504.532 kb on + strand, within Echvi_0460 at 504.532 kb on + strand, within Echvi_0460 at 504.533 kb on - strand, within Echvi_0460 at 504.573 kb on - strand, within Echvi_0460 at 504.573 kb on - strand, within Echvi_0460 at 504.575 kb on - strand, within Echvi_0460
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 501,893 - -1.1 501,901 - +0.8 501,924 - -1.8 502,843 - -1.2 502,863 + -0.8 502,863 + +1.4 502,863 + -0.1 502,863 + -1.3 502,863 + +0.5 502,863 + +0.9 502,867 + -1.3 502,884 + -1.3 502,884 + +0.4 502,884 + -0.4 502,895 - -1.5 503,068 - Echvi_0459 0.19 -0.7 503,265 - Echvi_0459 0.40 -0.8 503,286 + Echvi_0459 0.42 -0.4 503,286 + Echvi_0459 0.42 -1.3 503,334 - Echvi_0459 0.47 +0.0 504,094 + Echvi_0460 0.17 -1.0 504,503 + Echvi_0460 0.63 +0.6 504,530 + Echvi_0460 0.66 -0.1 504,532 + Echvi_0460 0.66 -0.2 504,532 + Echvi_0460 0.66 +0.9 504,532 + Echvi_0460 0.66 +0.2 504,533 - Echvi_0460 0.66 +3.3 504,573 - Echvi_0460 0.71 -0.1 504,573 - Echvi_0460 0.71 -0.9 504,575 - Echvi_0460 0.71 +0.5
Or see this region's nucleotide sequence