Experiment: m.b. Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21505 and CA264_21510 are separated by 149 nucleotides CA264_21510 and CA264_21515 are separated by 324 nucleotides
CA264_21505: CA264_21505 - hypothetical protein, at 169,530 to 170,258
_21505
CA264_21510: CA264_21510 - copper oxidase, at 170,408 to 172,942
_21510
CA264_21515: CA264_21515 - MATE family efflux transporter, at 173,267 to 174,706
_21515
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.503 kb on + strand at 169.508 kb on + strand at 169.508 kb on + strand at 169.512 kb on + strand at 169.632 kb on - strand, within CA264_21505 at 169.719 kb on - strand, within CA264_21505 at 169.737 kb on - strand, within CA264_21505 at 169.737 kb on - strand, within CA264_21505 at 169.809 kb on + strand, within CA264_21505 at 169.826 kb on - strand, within CA264_21505 at 169.826 kb on - strand, within CA264_21505 at 169.874 kb on - strand, within CA264_21505 at 169.928 kb on + strand, within CA264_21505 at 169.992 kb on - strand, within CA264_21505 at 169.992 kb on - strand, within CA264_21505 at 170.009 kb on + strand, within CA264_21505 at 170.009 kb on + strand, within CA264_21505 at 170.108 kb on - strand, within CA264_21505 at 170.108 kb on - strand, within CA264_21505 at 170.108 kb on - strand, within CA264_21505 at 170.150 kb on - strand, within CA264_21505 at 170.160 kb on - strand, within CA264_21505 at 170.287 kb on + strand at 170.295 kb on + strand at 170.303 kb on + strand at 170.311 kb on + strand at 170.317 kb on + strand at 170.355 kb on + strand at 170.355 kb on + strand at 170.356 kb on - strand at 170.356 kb on - strand at 170.380 kb on + strand at 170.381 kb on - strand at 170.402 kb on + strand at 170.402 kb on + strand at 170.403 kb on - strand at 170.437 kb on - strand at 170.461 kb on + strand at 170.461 kb on + strand at 170.475 kb on + strand at 170.475 kb on + strand at 170.490 kb on + strand at 170.509 kb on - strand at 170.607 kb on - strand at 170.642 kb on - strand at 170.642 kb on - strand at 170.687 kb on + strand, within CA264_21510 at 170.687 kb on + strand, within CA264_21510 at 170.687 kb on + strand, within CA264_21510 at 170.701 kb on + strand, within CA264_21510 at 170.726 kb on - strand, within CA264_21510 at 170.784 kb on + strand, within CA264_21510 at 170.785 kb on - strand, within CA264_21510 at 170.796 kb on + strand, within CA264_21510 at 170.818 kb on - strand, within CA264_21510 at 170.828 kb on - strand, within CA264_21510 at 170.849 kb on - strand, within CA264_21510 at 170.876 kb on + strand, within CA264_21510 at 170.876 kb on + strand, within CA264_21510 at 170.877 kb on - strand, within CA264_21510 at 170.971 kb on + strand, within CA264_21510 at 170.972 kb on - strand, within CA264_21510 at 170.972 kb on - strand, within CA264_21510 at 171.045 kb on + strand, within CA264_21510 at 171.052 kb on + strand, within CA264_21510 at 171.122 kb on + strand, within CA264_21510 at 171.122 kb on + strand, within CA264_21510 at 171.122 kb on + strand, within CA264_21510 at 171.214 kb on + strand, within CA264_21510 at 171.215 kb on - strand, within CA264_21510 at 171.309 kb on + strand, within CA264_21510 at 171.310 kb on - strand, within CA264_21510 at 171.399 kb on + strand, within CA264_21510 at 171.410 kb on + strand, within CA264_21510 at 171.464 kb on + strand, within CA264_21510 at 171.465 kb on - strand, within CA264_21510 at 171.469 kb on + strand, within CA264_21510 at 171.515 kb on - strand, within CA264_21510 at 171.793 kb on - strand, within CA264_21510 at 171.828 kb on + strand, within CA264_21510 at 171.883 kb on + strand, within CA264_21510 at 171.883 kb on + strand, within CA264_21510 at 171.922 kb on - strand, within CA264_21510 at 171.922 kb on - strand, within CA264_21510 at 171.936 kb on + strand, within CA264_21510 at 171.937 kb on - strand, within CA264_21510 at 171.974 kb on + strand, within CA264_21510 at 172.039 kb on - strand, within CA264_21510 at 172.052 kb on + strand, within CA264_21510 at 172.189 kb on - strand, within CA264_21510 at 172.189 kb on - strand, within CA264_21510 at 172.189 kb on - strand, within CA264_21510 at 172.190 kb on + strand, within CA264_21510 at 172.190 kb on + strand, within CA264_21510 at 172.190 kb on + strand, within CA264_21510 at 172.190 kb on + strand, within CA264_21510 at 172.191 kb on - strand, within CA264_21510 at 172.235 kb on + strand, within CA264_21510 at 172.235 kb on + strand, within CA264_21510 at 172.235 kb on + strand, within CA264_21510 at 172.237 kb on + strand, within CA264_21510 at 172.237 kb on + strand, within CA264_21510 at 172.246 kb on + strand, within CA264_21510 at 172.259 kb on + strand, within CA264_21510 at 172.284 kb on + strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.285 kb on - strand, within CA264_21510 at 172.319 kb on - strand, within CA264_21510 at 172.330 kb on - strand, within CA264_21510 at 172.360 kb on - strand, within CA264_21510 at 172.448 kb on + strand, within CA264_21510 at 172.449 kb on - strand, within CA264_21510 at 172.475 kb on - strand, within CA264_21510 at 172.482 kb on + strand, within CA264_21510 at 172.482 kb on + strand, within CA264_21510 at 172.483 kb on - strand, within CA264_21510 at 172.515 kb on - strand, within CA264_21510 at 172.570 kb on + strand, within CA264_21510 at 172.626 kb on + strand, within CA264_21510 at 172.698 kb on - strand at 172.909 kb on + strand at 172.909 kb on + strand at 172.918 kb on + strand at 172.952 kb on - strand at 172.952 kb on - strand at 172.953 kb on + strand at 172.953 kb on + strand at 172.953 kb on + strand at 173.004 kb on + strand at 173.005 kb on - strand at 173.005 kb on - strand at 173.011 kb on - strand at 173.052 kb on + strand at 173.060 kb on - strand at 173.068 kb on - strand at 173.112 kb on + strand at 173.112 kb on + strand at 173.113 kb on - strand at 173.113 kb on - strand at 173.113 kb on - strand at 173.116 kb on - strand at 173.116 kb on - strand at 173.116 kb on - strand at 173.116 kb on - strand at 173.141 kb on - strand at 173.141 kb on - strand at 173.141 kb on - strand at 173.158 kb on + strand at 173.158 kb on + strand at 173.158 kb on + strand at 173.159 kb on - strand at 173.166 kb on - strand at 173.168 kb on + strand at 173.168 kb on + strand at 173.169 kb on - strand at 173.169 kb on - strand at 173.192 kb on + strand at 173.200 kb on + strand at 173.245 kb on - strand at 173.265 kb on - strand at 173.268 kb on + strand at 173.268 kb on + strand at 173.269 kb on - strand at 173.269 kb on - strand at 173.271 kb on + strand at 173.276 kb on - strand at 173.276 kb on - strand at 173.279 kb on - strand at 173.362 kb on + strand at 173.379 kb on + strand at 173.413 kb on + strand, within CA264_21515 at 173.413 kb on + strand, within CA264_21515 at 173.438 kb on - strand, within CA264_21515 at 173.466 kb on + strand, within CA264_21515 at 173.466 kb on + strand, within CA264_21515 at 173.467 kb on - strand, within CA264_21515 at 173.467 kb on - strand, within CA264_21515 at 173.470 kb on - strand, within CA264_21515 at 173.497 kb on + strand, within CA264_21515 at 173.497 kb on + strand, within CA264_21515 at 173.514 kb on + strand, within CA264_21515 at 173.547 kb on + strand, within CA264_21515 at 173.548 kb on - strand, within CA264_21515 at 173.568 kb on - strand, within CA264_21515 at 173.729 kb on + strand, within CA264_21515 at 173.756 kb on + strand, within CA264_21515 at 173.757 kb on - strand, within CA264_21515 at 173.757 kb on - strand, within CA264_21515 at 173.771 kb on + strand, within CA264_21515 at 173.771 kb on + strand, within CA264_21515 at 173.772 kb on - strand, within CA264_21515 at 173.795 kb on - strand, within CA264_21515 at 173.824 kb on + strand, within CA264_21515 at 173.826 kb on + strand, within CA264_21515 at 173.827 kb on - strand, within CA264_21515 at 173.904 kb on + strand, within CA264_21515 at 173.934 kb on - strand, within CA264_21515
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol% remove 169,503 + +0.2 169,508 + +0.2 169,508 + -0.3 169,512 + -0.2 169,632 - CA264_21505 0.14 +0.7 169,719 - CA264_21505 0.26 +1.4 169,737 - CA264_21505 0.28 -1.0 169,737 - CA264_21505 0.28 -0.9 169,809 + CA264_21505 0.38 -0.5 169,826 - CA264_21505 0.41 -0.5 169,826 - CA264_21505 0.41 -0.2 169,874 - CA264_21505 0.47 +1.1 169,928 + CA264_21505 0.55 -0.5 169,992 - CA264_21505 0.63 +0.7 169,992 - CA264_21505 0.63 -0.5 170,009 + CA264_21505 0.66 +0.9 170,009 + CA264_21505 0.66 -0.6 170,108 - CA264_21505 0.79 -0.1 170,108 - CA264_21505 0.79 -0.4 170,108 - CA264_21505 0.79 +1.0 170,150 - CA264_21505 0.85 -0.4 170,160 - CA264_21505 0.86 +0.1 170,287 + +0.2 170,295 + +0.8 170,303 + +0.4 170,311 + -0.2 170,317 + -0.1 170,355 + +0.2 170,355 + +1.5 170,356 - -0.6 170,356 - -0.0 170,380 + -0.4 170,381 - -0.1 170,402 + -0.1 170,402 + +0.1 170,403 - -0.5 170,437 - -0.2 170,461 + -0.2 170,461 + -0.6 170,475 + -0.1 170,475 + -0.0 170,490 + -0.4 170,509 - +0.0 170,607 - -0.4 170,642 - -0.3 170,642 - -0.7 170,687 + CA264_21510 0.11 +0.1 170,687 + CA264_21510 0.11 -0.2 170,687 + CA264_21510 0.11 +0.7 170,701 + CA264_21510 0.12 -1.0 170,726 - CA264_21510 0.13 -0.4 170,784 + CA264_21510 0.15 +0.0 170,785 - CA264_21510 0.15 +0.1 170,796 + CA264_21510 0.15 -0.0 170,818 - CA264_21510 0.16 -0.6 170,828 - CA264_21510 0.17 -0.3 170,849 - CA264_21510 0.17 -0.2 170,876 + CA264_21510 0.18 -0.8 170,876 + CA264_21510 0.18 +0.7 170,877 - CA264_21510 0.19 -1.1 170,971 + CA264_21510 0.22 +0.3 170,972 - CA264_21510 0.22 -0.7 170,972 - CA264_21510 0.22 -0.6 171,045 + CA264_21510 0.25 -0.9 171,052 + CA264_21510 0.25 +0.8 171,122 + CA264_21510 0.28 -0.1 171,122 + CA264_21510 0.28 -0.5 171,122 + CA264_21510 0.28 -0.1 171,214 + CA264_21510 0.32 -0.4 171,215 - CA264_21510 0.32 -1.2 171,309 + CA264_21510 0.36 +0.0 171,310 - CA264_21510 0.36 -0.4 171,399 + CA264_21510 0.39 +0.3 171,410 + CA264_21510 0.40 -0.5 171,464 + CA264_21510 0.42 +0.0 171,465 - CA264_21510 0.42 -1.0 171,469 + CA264_21510 0.42 -1.5 171,515 - CA264_21510 0.44 -0.6 171,793 - CA264_21510 0.55 -1.9 171,828 + CA264_21510 0.56 -0.3 171,883 + CA264_21510 0.58 +0.2 171,883 + CA264_21510 0.58 +1.9 171,922 - CA264_21510 0.60 -0.7 171,922 - CA264_21510 0.60 -0.9 171,936 + CA264_21510 0.60 -0.3 171,937 - CA264_21510 0.60 -0.2 171,974 + CA264_21510 0.62 -0.4 172,039 - CA264_21510 0.64 -0.2 172,052 + CA264_21510 0.65 -0.1 172,189 - CA264_21510 0.70 -0.3 172,189 - CA264_21510 0.70 +0.9 172,189 - CA264_21510 0.70 -0.6 172,190 + CA264_21510 0.70 -0.5 172,190 + CA264_21510 0.70 +1.9 172,190 + CA264_21510 0.70 +0.2 172,190 + CA264_21510 0.70 +1.1 172,191 - CA264_21510 0.70 -0.4 172,235 + CA264_21510 0.72 -0.5 172,235 + CA264_21510 0.72 -1.5 172,235 + CA264_21510 0.72 -0.5 172,237 + CA264_21510 0.72 +0.1 172,237 + CA264_21510 0.72 -0.6 172,246 + CA264_21510 0.73 -1.3 172,259 + CA264_21510 0.73 -1.6 172,284 + CA264_21510 0.74 +0.3 172,285 - CA264_21510 0.74 -0.2 172,285 - CA264_21510 0.74 +0.2 172,285 - CA264_21510 0.74 +0.6 172,285 - CA264_21510 0.74 -0.3 172,319 - CA264_21510 0.75 -0.6 172,330 - CA264_21510 0.76 -0.7 172,360 - CA264_21510 0.77 -2.2 172,448 + CA264_21510 0.80 -0.9 172,449 - CA264_21510 0.81 -2.4 172,475 - CA264_21510 0.82 +0.1 172,482 + CA264_21510 0.82 +0.2 172,482 + CA264_21510 0.82 +0.1 172,483 - CA264_21510 0.82 -0.1 172,515 - CA264_21510 0.83 -0.2 172,570 + CA264_21510 0.85 -0.2 172,626 + CA264_21510 0.87 -0.1 172,698 - +0.6 172,909 + +0.1 172,909 + -0.8 172,918 + -0.1 172,952 - -0.5 172,952 - -2.2 172,953 + -0.4 172,953 + -0.3 172,953 + +0.1 173,004 + +0.5 173,005 - -0.1 173,005 - +0.1 173,011 - -0.2 173,052 + +0.2 173,060 - +0.1 173,068 - -1.1 173,112 + -0.5 173,112 + -0.5 173,113 - +0.1 173,113 - +0.5 173,113 - -0.6 173,116 - -0.5 173,116 - -0.0 173,116 - -0.9 173,116 - -1.5 173,141 - -0.4 173,141 - -0.4 173,141 - -0.2 173,158 + -0.1 173,158 + -0.0 173,158 + -0.5 173,159 - -0.8 173,166 - -1.3 173,168 + +0.8 173,168 + -0.1 173,169 - -0.3 173,169 - +0.4 173,192 + -0.8 173,200 + +0.0 173,245 - +1.3 173,265 - -0.4 173,268 + +0.1 173,268 + +0.1 173,269 - +0.5 173,269 - +0.1 173,271 + -0.7 173,276 - -2.5 173,276 - -0.4 173,279 - -0.0 173,362 + -0.3 173,379 + +0.5 173,413 + CA264_21515 0.10 -0.6 173,413 + CA264_21515 0.10 -0.8 173,438 - CA264_21515 0.12 -0.0 173,466 + CA264_21515 0.14 +0.1 173,466 + CA264_21515 0.14 +0.3 173,467 - CA264_21515 0.14 -0.3 173,467 - CA264_21515 0.14 -0.4 173,470 - CA264_21515 0.14 -0.1 173,497 + CA264_21515 0.16 +0.3 173,497 + CA264_21515 0.16 +0.3 173,514 + CA264_21515 0.17 +0.9 173,547 + CA264_21515 0.19 -2.5 173,548 - CA264_21515 0.20 -0.7 173,568 - CA264_21515 0.21 -0.1 173,729 + CA264_21515 0.32 +0.1 173,756 + CA264_21515 0.34 +0.1 173,757 - CA264_21515 0.34 -0.3 173,757 - CA264_21515 0.34 -0.1 173,771 + CA264_21515 0.35 -0.4 173,771 + CA264_21515 0.35 +1.3 173,772 - CA264_21515 0.35 +0.4 173,795 - CA264_21515 0.37 +1.2 173,824 + CA264_21515 0.39 -0.0 173,826 + CA264_21515 0.39 +1.1 173,827 - CA264_21515 0.39 -1.1 173,904 + CA264_21515 0.44 +0.4 173,934 - CA264_21515 0.46 -0.9
Or see this region's nucleotide sequence