Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20865

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20860 and CA264_20865 are separated by 221 nucleotidesCA264_20865 and CA264_20870 are separated by 130 nucleotides CA264_20860: CA264_20860 - site-specific DNA-methyltransferase, at 31,910 to 33,493 _20860 CA264_20865: CA264_20865 - restriction endonuclease, at 33,715 to 36,360 _20865 CA264_20870: CA264_20870 - addiction module protein, at 36,491 to 37,606 _20870 Position (kb) 33 34 35 36 37Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 32.753 kb on - strand, within CA264_20860at 32.753 kb on - strand, within CA264_20860at 32.754 kb on + strand, within CA264_20860at 32.881 kb on + strand, within CA264_20860at 32.887 kb on + strand, within CA264_20860at 32.887 kb on + strand, within CA264_20860at 32.893 kb on + strand, within CA264_20860at 32.893 kb on + strand, within CA264_20860at 32.894 kb on - strand, within CA264_20860at 32.916 kb on + strand, within CA264_20860at 33.051 kb on - strand, within CA264_20860at 33.051 kb on - strand, within CA264_20860at 33.113 kb on - strand, within CA264_20860at 33.121 kb on - strand, within CA264_20860at 33.143 kb on - strand, within CA264_20860at 33.146 kb on + strand, within CA264_20860at 33.147 kb on - strand, within CA264_20860at 33.147 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.225 kb on - strand, within CA264_20860at 33.234 kb on - strand, within CA264_20860at 33.281 kb on - strand, within CA264_20860at 33.357 kb on - strandat 33.395 kb on + strandat 33.395 kb on + strandat 33.404 kb on + strandat 33.449 kb on - strandat 33.479 kb on - strandat 33.530 kb on - strandat 33.540 kb on - strandat 33.540 kb on - strandat 33.542 kb on - strandat 33.542 kb on - strandat 33.545 kb on - strandat 33.623 kb on - strandat 33.623 kb on - strandat 33.713 kb on - strandat 33.722 kb on + strandat 33.730 kb on + strandat 33.731 kb on - strandat 33.731 kb on - strandat 33.811 kb on - strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.861 kb on + strandat 33.879 kb on + strandat 33.939 kb on + strandat 34.004 kb on + strand, within CA264_20865at 34.053 kb on + strand, within CA264_20865at 34.117 kb on + strand, within CA264_20865at 34.118 kb on - strand, within CA264_20865at 34.118 kb on - strand, within CA264_20865at 34.279 kb on + strand, within CA264_20865at 34.280 kb on - strand, within CA264_20865at 34.280 kb on - strand, within CA264_20865at 34.281 kb on + strand, within CA264_20865at 34.282 kb on - strand, within CA264_20865at 34.308 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.364 kb on + strand, within CA264_20865at 34.365 kb on - strand, within CA264_20865at 34.470 kb on + strand, within CA264_20865at 34.492 kb on - strand, within CA264_20865at 34.538 kb on - strand, within CA264_20865at 34.637 kb on - strand, within CA264_20865at 34.640 kb on + strand, within CA264_20865at 34.641 kb on - strand, within CA264_20865at 34.701 kb on + strand, within CA264_20865at 34.727 kb on + strand, within CA264_20865at 34.728 kb on - strand, within CA264_20865at 34.755 kb on - strand, within CA264_20865at 34.830 kb on + strand, within CA264_20865at 34.831 kb on - strand, within CA264_20865at 34.833 kb on - strand, within CA264_20865at 34.870 kb on + strand, within CA264_20865at 34.874 kb on + strand, within CA264_20865at 34.875 kb on - strand, within CA264_20865at 34.875 kb on - strand, within CA264_20865at 34.877 kb on + strand, within CA264_20865at 34.878 kb on - strand, within CA264_20865at 34.949 kb on - strand, within CA264_20865at 34.988 kb on - strand, within CA264_20865at 35.014 kb on - strand, within CA264_20865at 35.032 kb on - strand, within CA264_20865at 35.205 kb on + strand, within CA264_20865at 35.206 kb on - strand, within CA264_20865at 35.206 kb on - strand, within CA264_20865at 35.206 kb on - strand, within CA264_20865at 35.210 kb on - strand, within CA264_20865at 35.221 kb on - strand, within CA264_20865at 35.229 kb on - strand, within CA264_20865at 35.367 kb on - strand, within CA264_20865at 35.442 kb on - strand, within CA264_20865at 35.488 kb on - strand, within CA264_20865at 35.505 kb on - strand, within CA264_20865at 35.535 kb on + strand, within CA264_20865at 35.536 kb on - strand, within CA264_20865at 35.536 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.643 kb on - strand, within CA264_20865at 35.737 kb on + strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.760 kb on - strand, within CA264_20865at 35.793 kb on - strand, within CA264_20865at 35.831 kb on - strand, within CA264_20865at 35.836 kb on + strand, within CA264_20865at 35.837 kb on - strand, within CA264_20865at 35.837 kb on - strand, within CA264_20865at 35.845 kb on - strand, within CA264_20865at 35.845 kb on - strand, within CA264_20865at 35.850 kb on - strand, within CA264_20865at 35.899 kb on - strand, within CA264_20865at 36.025 kb on - strand, within CA264_20865at 36.140 kb on - strandat 36.179 kb on + strandat 36.180 kb on - strandat 36.281 kb on - strandat 36.281 kb on - strandat 36.301 kb on - strandat 36.320 kb on - strandat 36.359 kb on - strandat 36.359 kb on - strandat 36.408 kb on - strandat 36.408 kb on - strandat 36.408 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.425 kb on - strandat 36.425 kb on - strandat 36.429 kb on - strandat 36.429 kb on - strandat 36.429 kb on - strandat 36.429 kb on - strandat 36.431 kb on - strandat 36.476 kb on - strandat 36.604 kb on + strand, within CA264_20870at 36.621 kb on + strand, within CA264_20870at 36.621 kb on + strand, within CA264_20870at 36.622 kb on - strand, within CA264_20870at 36.732 kb on + strand, within CA264_20870at 36.746 kb on - strand, within CA264_20870at 36.761 kb on + strand, within CA264_20870at 36.805 kb on + strand, within CA264_20870at 36.819 kb on + strand, within CA264_20870at 36.819 kb on + strand, within CA264_20870at 36.827 kb on - strand, within CA264_20870at 36.833 kb on - strand, within CA264_20870at 36.875 kb on - strand, within CA264_20870at 36.875 kb on - strand, within CA264_20870at 36.981 kb on - strand, within CA264_20870at 36.981 kb on - strand, within CA264_20870at 36.982 kb on + strand, within CA264_20870at 36.982 kb on + strand, within CA264_20870at 36.983 kb on - strand, within CA264_20870at 36.983 kb on - strand, within CA264_20870at 37.067 kb on + strand, within CA264_20870at 37.068 kb on - strand, within CA264_20870at 37.068 kb on - strand, within CA264_20870at 37.093 kb on + strand, within CA264_20870at 37.093 kb on + strand, within CA264_20870at 37.094 kb on - strand, within CA264_20870at 37.094 kb on - strand, within CA264_20870at 37.110 kb on - strand, within CA264_20870at 37.137 kb on + strand, within CA264_20870at 37.138 kb on - strand, within CA264_20870at 37.149 kb on - strand, within CA264_20870at 37.160 kb on + strand, within CA264_20870at 37.161 kb on - strand, within CA264_20870at 37.355 kb on + strand, within CA264_20870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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32,753 - CA264_20860 0.53 -2.9
32,753 - CA264_20860 0.53 -2.1
32,754 + CA264_20860 0.53 -3.2
32,881 + CA264_20860 0.61 -0.9
32,887 + CA264_20860 0.62 -4.1
32,887 + CA264_20860 0.62 -1.8
32,893 + CA264_20860 0.62 -4.4
32,893 + CA264_20860 0.62 -2.8
32,894 - CA264_20860 0.62 -3.2
32,916 + CA264_20860 0.64 -3.1
33,051 - CA264_20860 0.72 -1.3
33,051 - CA264_20860 0.72 -3.8
33,113 - CA264_20860 0.76 -3.4
33,121 - CA264_20860 0.76 -4.8
33,143 - CA264_20860 0.78 -2.8
33,146 + CA264_20860 0.78 -2.7
33,147 - CA264_20860 0.78 -2.8
33,147 - CA264_20860 0.78 -4.6
33,152 - CA264_20860 0.78 -2.0
33,152 - CA264_20860 0.78 -2.3
33,152 - CA264_20860 0.78 -0.5
33,225 - CA264_20860 0.83 -1.3
33,234 - CA264_20860 0.84 -2.3
33,281 - CA264_20860 0.87 -3.8
33,357 - -2.7
33,395 + -2.2
33,395 + -2.1
33,404 + -2.9
33,449 - -2.1
33,479 - -2.6
33,530 - -3.3
33,540 - -5.5
33,540 - -5.3
33,542 - -3.2
33,542 - -3.8
33,545 - -2.5
33,623 - -3.6
33,623 - -3.5
33,713 - -1.5
33,722 + -3.5
33,730 + -2.6
33,731 - -0.4
33,731 - -0.5
33,811 - +0.9
33,838 + -4.4
33,838 + -4.0
33,861 + -3.5
33,879 + -2.9
33,939 + -1.8
34,004 + CA264_20865 0.11 -2.5
34,053 + CA264_20865 0.13 -1.4
34,117 + CA264_20865 0.15 -3.2
34,118 - CA264_20865 0.15 -0.6
34,118 - CA264_20865 0.15 +1.1
34,279 + CA264_20865 0.21 -1.8
34,280 - CA264_20865 0.21 -0.3
34,280 - CA264_20865 0.21 +0.4
34,281 + CA264_20865 0.21 -2.4
34,282 - CA264_20865 0.21 -3.6
34,308 + CA264_20865 0.22 -4.1
34,358 + CA264_20865 0.24 -3.3
34,358 + CA264_20865 0.24 -1.4
34,358 + CA264_20865 0.24 -3.2
34,364 + CA264_20865 0.25 -3.7
34,365 - CA264_20865 0.25 -3.7
34,470 + CA264_20865 0.29 -1.2
34,492 - CA264_20865 0.29 -2.9
34,538 - CA264_20865 0.31 -1.2
34,637 - CA264_20865 0.35 -0.1
34,640 + CA264_20865 0.35 -2.8
34,641 - CA264_20865 0.35 -1.8
34,701 + CA264_20865 0.37 -0.6
34,727 + CA264_20865 0.38 -0.9
34,728 - CA264_20865 0.38 -4.8
34,755 - CA264_20865 0.39 -4.3
34,830 + CA264_20865 0.42 -0.9
34,831 - CA264_20865 0.42 -4.3
34,833 - CA264_20865 0.42 -3.2
34,870 + CA264_20865 0.44 -2.8
34,874 + CA264_20865 0.44 -1.8
34,875 - CA264_20865 0.44 -3.4
34,875 - CA264_20865 0.44 -3.2
34,877 + CA264_20865 0.44 -0.2
34,878 - CA264_20865 0.44 -2.3
34,949 - CA264_20865 0.47 -2.7
34,988 - CA264_20865 0.48 -4.1
35,014 - CA264_20865 0.49 -3.2
35,032 - CA264_20865 0.50 -0.3
35,205 + CA264_20865 0.56 -3.9
35,206 - CA264_20865 0.56 +0.1
35,206 - CA264_20865 0.56 -1.7
35,206 - CA264_20865 0.56 -3.3
35,210 - CA264_20865 0.57 -1.2
35,221 - CA264_20865 0.57 -2.4
35,229 - CA264_20865 0.57 -5.8
35,367 - CA264_20865 0.62 -3.0
35,442 - CA264_20865 0.65 -4.4
35,488 - CA264_20865 0.67 -3.0
35,505 - CA264_20865 0.68 -2.4
35,535 + CA264_20865 0.69 -1.6
35,536 - CA264_20865 0.69 -3.5
35,536 - CA264_20865 0.69 -0.3
35,570 - CA264_20865 0.70 -2.7
35,570 - CA264_20865 0.70 -4.5
35,570 - CA264_20865 0.70 -2.8
35,570 - CA264_20865 0.70 -1.3
35,643 - CA264_20865 0.73 -2.8
35,737 + CA264_20865 0.76 -3.5
35,738 - CA264_20865 0.76 -0.9
35,738 - CA264_20865 0.76 -1.7
35,738 - CA264_20865 0.76 -3.0
35,738 - CA264_20865 0.76 -2.6
35,760 - CA264_20865 0.77 -6.2
35,793 - CA264_20865 0.79 -3.8
35,831 - CA264_20865 0.80 -4.4
35,836 + CA264_20865 0.80 -2.3
35,837 - CA264_20865 0.80 -2.7
35,837 - CA264_20865 0.80 -2.8
35,845 - CA264_20865 0.80 -2.5
35,845 - CA264_20865 0.80 -4.4
35,850 - CA264_20865 0.81 -3.6
35,899 - CA264_20865 0.83 -2.9
36,025 - CA264_20865 0.87 -3.5
36,140 - -3.0
36,179 + -1.5
36,180 - -4.1
36,281 - -2.9
36,281 - -4.2
36,301 - -2.8
36,320 - -3.2
36,359 - -3.6
36,359 - -3.7
36,408 - +0.3
36,408 - -2.9
36,408 - -1.9
36,421 - -1.5
36,421 - -0.9
36,421 - -1.6
36,421 - -3.9
36,421 - -3.0
36,425 - -2.2
36,425 - -2.8
36,429 - -3.0
36,429 - -2.1
36,429 - -2.4
36,429 - -3.4
36,431 - -2.7
36,476 - -2.2
36,604 + CA264_20870 0.10 +1.1
36,621 + CA264_20870 0.12 +0.7
36,621 + CA264_20870 0.12 +0.2
36,622 - CA264_20870 0.12 -0.5
36,732 + CA264_20870 0.22 -0.1
36,746 - CA264_20870 0.23 -0.5
36,761 + CA264_20870 0.24 +0.4
36,805 + CA264_20870 0.28 -0.6
36,819 + CA264_20870 0.29 +0.7
36,819 + CA264_20870 0.29 +0.1
36,827 - CA264_20870 0.30 +0.9
36,833 - CA264_20870 0.31 -0.6
36,875 - CA264_20870 0.34 +0.0
36,875 - CA264_20870 0.34 +0.5
36,981 - CA264_20870 0.44 -0.5
36,981 - CA264_20870 0.44 +0.1
36,982 + CA264_20870 0.44 -0.2
36,982 + CA264_20870 0.44 +0.3
36,983 - CA264_20870 0.44 -0.0
36,983 - CA264_20870 0.44 +0.1
37,067 + CA264_20870 0.52 -0.2
37,068 - CA264_20870 0.52 -0.3
37,068 - CA264_20870 0.52 +0.1
37,093 + CA264_20870 0.54 -0.3
37,093 + CA264_20870 0.54 -0.8
37,094 - CA264_20870 0.54 -0.0
37,094 - CA264_20870 0.54 -0.1
37,110 - CA264_20870 0.55 -0.1
37,137 + CA264_20870 0.58 -0.2
37,138 - CA264_20870 0.58 +0.1
37,149 - CA264_20870 0.59 -0.6
37,160 + CA264_20870 0.60 +0.0
37,161 - CA264_20870 0.60 -0.3
37,355 + CA264_20870 0.77 -2.8

Or see this region's nucleotide sequence