Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20860

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20855 and CA264_20860 are separated by 325 nucleotidesCA264_20860 and CA264_20865 are separated by 221 nucleotides CA264_20855: CA264_20855 - manganese catalase, at 30,640 to 31,584 _20855 CA264_20860: CA264_20860 - site-specific DNA-methyltransferase, at 31,910 to 33,493 _20860 CA264_20865: CA264_20865 - restriction endonuclease, at 33,715 to 36,360 _20865 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 30.914 kb on + strand, within CA264_20855at 30.914 kb on + strand, within CA264_20855at 30.926 kb on + strand, within CA264_20855at 30.971 kb on - strand, within CA264_20855at 30.972 kb on + strand, within CA264_20855at 30.972 kb on + strand, within CA264_20855at 30.972 kb on + strand, within CA264_20855at 30.973 kb on - strand, within CA264_20855at 31.045 kb on + strand, within CA264_20855at 31.050 kb on - strand, within CA264_20855at 31.050 kb on - strand, within CA264_20855at 31.076 kb on + strand, within CA264_20855at 31.077 kb on - strand, within CA264_20855at 31.083 kb on - strand, within CA264_20855at 31.117 kb on - strand, within CA264_20855at 31.117 kb on - strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.157 kb on + strand, within CA264_20855at 31.158 kb on - strand, within CA264_20855at 31.415 kb on + strand, within CA264_20855at 31.577 kb on + strandat 31.717 kb on + strandat 31.743 kb on - strandat 31.743 kb on - strandat 31.745 kb on - strandat 31.750 kb on - strandat 31.823 kb on + strandat 31.882 kb on + strandat 31.915 kb on + strandat 31.944 kb on + strandat 31.991 kb on + strandat 31.991 kb on + strandat 31.994 kb on - strandat 32.047 kb on - strandat 32.114 kb on + strand, within CA264_20860at 32.130 kb on - strand, within CA264_20860at 32.169 kb on + strand, within CA264_20860at 32.184 kb on + strand, within CA264_20860at 32.254 kb on + strand, within CA264_20860at 32.261 kb on + strand, within CA264_20860at 32.330 kb on - strand, within CA264_20860at 32.330 kb on - strand, within CA264_20860at 32.356 kb on - strand, within CA264_20860at 32.389 kb on + strand, within CA264_20860at 32.393 kb on - strand, within CA264_20860at 32.400 kb on + strand, within CA264_20860at 32.401 kb on - strand, within CA264_20860at 32.459 kb on + strand, within CA264_20860at 32.460 kb on - strand, within CA264_20860at 32.460 kb on - strand, within CA264_20860at 32.462 kb on - strand, within CA264_20860at 32.462 kb on - strand, within CA264_20860at 32.462 kb on - strand, within CA264_20860at 32.472 kb on - strand, within CA264_20860at 32.525 kb on - strand, within CA264_20860at 32.525 kb on - strand, within CA264_20860at 32.534 kb on + strand, within CA264_20860at 32.591 kb on - strand, within CA264_20860at 32.615 kb on + strand, within CA264_20860at 32.616 kb on - strand, within CA264_20860at 32.638 kb on + strand, within CA264_20860at 32.753 kb on - strand, within CA264_20860at 32.753 kb on - strand, within CA264_20860at 32.754 kb on + strand, within CA264_20860at 32.881 kb on + strand, within CA264_20860at 32.887 kb on + strand, within CA264_20860at 32.887 kb on + strand, within CA264_20860at 32.893 kb on + strand, within CA264_20860at 32.893 kb on + strand, within CA264_20860at 32.894 kb on - strand, within CA264_20860at 32.916 kb on + strand, within CA264_20860at 33.051 kb on - strand, within CA264_20860at 33.051 kb on - strand, within CA264_20860at 33.113 kb on - strand, within CA264_20860at 33.121 kb on - strand, within CA264_20860at 33.143 kb on - strand, within CA264_20860at 33.146 kb on + strand, within CA264_20860at 33.147 kb on - strand, within CA264_20860at 33.147 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.225 kb on - strand, within CA264_20860at 33.234 kb on - strand, within CA264_20860at 33.281 kb on - strand, within CA264_20860at 33.357 kb on - strandat 33.395 kb on + strandat 33.395 kb on + strandat 33.404 kb on + strandat 33.449 kb on - strandat 33.479 kb on - strandat 33.530 kb on - strandat 33.540 kb on - strandat 33.540 kb on - strandat 33.542 kb on - strandat 33.542 kb on - strandat 33.545 kb on - strandat 33.623 kb on - strandat 33.623 kb on - strandat 33.713 kb on - strandat 33.722 kb on + strandat 33.730 kb on + strandat 33.731 kb on - strandat 33.731 kb on - strandat 33.811 kb on - strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.861 kb on + strandat 33.879 kb on + strandat 33.939 kb on + strandat 34.004 kb on + strand, within CA264_20865at 34.053 kb on + strand, within CA264_20865at 34.117 kb on + strand, within CA264_20865at 34.118 kb on - strand, within CA264_20865at 34.118 kb on - strand, within CA264_20865at 34.279 kb on + strand, within CA264_20865at 34.280 kb on - strand, within CA264_20865at 34.280 kb on - strand, within CA264_20865at 34.281 kb on + strand, within CA264_20865at 34.282 kb on - strand, within CA264_20865at 34.308 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.364 kb on + strand, within CA264_20865at 34.365 kb on - strand, within CA264_20865at 34.470 kb on + strand, within CA264_20865at 34.492 kb on - strand, within CA264_20865

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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30,914 + CA264_20855 0.29 -3.3
30,914 + CA264_20855 0.29 -2.0
30,926 + CA264_20855 0.30 -4.1
30,971 - CA264_20855 0.35 -0.5
30,972 + CA264_20855 0.35 -2.3
30,972 + CA264_20855 0.35 -4.0
30,972 + CA264_20855 0.35 -2.2
30,973 - CA264_20855 0.35 -0.3
31,045 + CA264_20855 0.43 -3.1
31,050 - CA264_20855 0.43 -3.1
31,050 - CA264_20855 0.43 -0.8
31,076 + CA264_20855 0.46 -1.4
31,077 - CA264_20855 0.46 -1.0
31,083 - CA264_20855 0.47 -1.4
31,117 - CA264_20855 0.50 -1.8
31,117 - CA264_20855 0.50 -1.6
31,157 + CA264_20855 0.55 -4.2
31,157 + CA264_20855 0.55 -3.1
31,157 + CA264_20855 0.55 -2.4
31,157 + CA264_20855 0.55 -1.2
31,158 - CA264_20855 0.55 -0.8
31,415 + CA264_20855 0.82 -2.7
31,577 + -4.1
31,717 + -5.0
31,743 - -3.1
31,743 - -2.7
31,745 - -2.0
31,750 - -4.2
31,823 + -2.1
31,882 + -4.1
31,915 + -3.4
31,944 + -6.4
31,991 + -2.8
31,991 + -4.6
31,994 - -1.6
32,047 - -2.8
32,114 + CA264_20860 0.13 -5.0
32,130 - CA264_20860 0.14 -1.7
32,169 + CA264_20860 0.16 -0.6
32,184 + CA264_20860 0.17 -5.3
32,254 + CA264_20860 0.22 -0.9
32,261 + CA264_20860 0.22 -2.6
32,330 - CA264_20860 0.27 -0.5
32,330 - CA264_20860 0.27 -0.3
32,356 - CA264_20860 0.28 -4.7
32,389 + CA264_20860 0.30 -2.7
32,393 - CA264_20860 0.30 -2.4
32,400 + CA264_20860 0.31 -3.9
32,401 - CA264_20860 0.31 -3.7
32,459 + CA264_20860 0.35 -3.3
32,460 - CA264_20860 0.35 -4.1
32,460 - CA264_20860 0.35 -4.2
32,462 - CA264_20860 0.35 -1.5
32,462 - CA264_20860 0.35 -3.9
32,462 - CA264_20860 0.35 -0.1
32,472 - CA264_20860 0.35 -1.8
32,525 - CA264_20860 0.39 -3.8
32,525 - CA264_20860 0.39 -2.4
32,534 + CA264_20860 0.39 -3.4
32,591 - CA264_20860 0.43 -3.1
32,615 + CA264_20860 0.45 -1.6
32,616 - CA264_20860 0.45 -2.2
32,638 + CA264_20860 0.46 -3.1
32,753 - CA264_20860 0.53 -2.9
32,753 - CA264_20860 0.53 -2.1
32,754 + CA264_20860 0.53 -3.2
32,881 + CA264_20860 0.61 -0.9
32,887 + CA264_20860 0.62 -4.1
32,887 + CA264_20860 0.62 -1.8
32,893 + CA264_20860 0.62 -4.4
32,893 + CA264_20860 0.62 -2.8
32,894 - CA264_20860 0.62 -3.2
32,916 + CA264_20860 0.64 -3.1
33,051 - CA264_20860 0.72 -1.3
33,051 - CA264_20860 0.72 -3.8
33,113 - CA264_20860 0.76 -3.4
33,121 - CA264_20860 0.76 -4.8
33,143 - CA264_20860 0.78 -2.8
33,146 + CA264_20860 0.78 -2.7
33,147 - CA264_20860 0.78 -2.8
33,147 - CA264_20860 0.78 -4.6
33,152 - CA264_20860 0.78 -2.0
33,152 - CA264_20860 0.78 -2.3
33,152 - CA264_20860 0.78 -0.5
33,225 - CA264_20860 0.83 -1.3
33,234 - CA264_20860 0.84 -2.3
33,281 - CA264_20860 0.87 -3.8
33,357 - -2.7
33,395 + -2.2
33,395 + -2.1
33,404 + -2.9
33,449 - -2.1
33,479 - -2.6
33,530 - -3.3
33,540 - -5.5
33,540 - -5.3
33,542 - -3.2
33,542 - -3.8
33,545 - -2.5
33,623 - -3.6
33,623 - -3.5
33,713 - -1.5
33,722 + -3.5
33,730 + -2.6
33,731 - -0.4
33,731 - -0.5
33,811 - +0.9
33,838 + -4.4
33,838 + -4.0
33,861 + -3.5
33,879 + -2.9
33,939 + -1.8
34,004 + CA264_20865 0.11 -2.5
34,053 + CA264_20865 0.13 -1.4
34,117 + CA264_20865 0.15 -3.2
34,118 - CA264_20865 0.15 -0.6
34,118 - CA264_20865 0.15 +1.1
34,279 + CA264_20865 0.21 -1.8
34,280 - CA264_20865 0.21 -0.3
34,280 - CA264_20865 0.21 +0.4
34,281 + CA264_20865 0.21 -2.4
34,282 - CA264_20865 0.21 -3.6
34,308 + CA264_20865 0.22 -4.1
34,358 + CA264_20865 0.24 -3.3
34,358 + CA264_20865 0.24 -1.4
34,358 + CA264_20865 0.24 -3.2
34,364 + CA264_20865 0.25 -3.7
34,365 - CA264_20865 0.25 -3.7
34,470 + CA264_20865 0.29 -1.2
34,492 - CA264_20865 0.29 -2.9

Or see this region's nucleotide sequence