Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16425

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16420 and CA264_16425 are separated by 204 nucleotidesCA264_16425 and CA264_16430 are separated by 182 nucleotides CA264_16420: CA264_16420 - molecular chaperone HtpG, at 3,818,556 to 3,820,373 _16420 CA264_16425: CA264_16425 - hypothetical protein, at 3,820,578 to 3,820,901 _16425 CA264_16430: CA264_16430 - TonB dependent receptor, at 3,821,084 to 3,823,462 _16430 Position (kb) 3820 3821Strain fitness (log2 ratio) -1 0 1 2 3at 3819.590 kb on - strand, within CA264_16420at 3819.597 kb on - strand, within CA264_16420at 3819.597 kb on - strand, within CA264_16420at 3819.621 kb on + strand, within CA264_16420at 3819.621 kb on + strand, within CA264_16420at 3819.621 kb on + strand, within CA264_16420at 3819.622 kb on - strand, within CA264_16420at 3819.622 kb on - strand, within CA264_16420at 3819.622 kb on - strand, within CA264_16420at 3819.622 kb on - strandat 3819.686 kb on + strand, within CA264_16420at 3819.686 kb on + strand, within CA264_16420at 3819.687 kb on - strand, within CA264_16420at 3819.688 kb on + strand, within CA264_16420at 3819.688 kb on + strand, within CA264_16420at 3819.689 kb on - strand, within CA264_16420at 3819.689 kb on - strand, within CA264_16420at 3819.790 kb on + strand, within CA264_16420at 3819.790 kb on + strand, within CA264_16420at 3819.790 kb on + strand, within CA264_16420at 3819.794 kb on + strand, within CA264_16420at 3819.794 kb on + strand, within CA264_16420at 3819.794 kb on + strand, within CA264_16420at 3819.801 kb on + strandat 3819.801 kb on + strand, within CA264_16420at 3819.801 kb on + strand, within CA264_16420at 3819.801 kb on + strand, within CA264_16420at 3819.802 kb on - strand, within CA264_16420at 3819.802 kb on - strand, within CA264_16420at 3819.802 kb on - strand, within CA264_16420at 3819.802 kb on - strand, within CA264_16420at 3819.803 kb on + strand, within CA264_16420at 3819.803 kb on + strand, within CA264_16420at 3819.806 kb on + strand, within CA264_16420at 3819.855 kb on + strand, within CA264_16420at 3819.856 kb on - strand, within CA264_16420at 3819.897 kb on - strand, within CA264_16420at 3819.971 kb on + strand, within CA264_16420at 3819.971 kb on + strand, within CA264_16420at 3819.971 kb on + strand, within CA264_16420at 3819.972 kb on - strand, within CA264_16420at 3819.992 kb on + strand, within CA264_16420at 3819.993 kb on - strand, within CA264_16420at 3819.993 kb on - strand, within CA264_16420at 3820.106 kb on - strand, within CA264_16420at 3820.131 kb on - strand, within CA264_16420at 3820.173 kb on - strand, within CA264_16420at 3820.226 kb on + strandat 3820.268 kb on + strandat 3820.355 kb on + strandat 3820.355 kb on + strandat 3820.355 kb on + strandat 3820.356 kb on - strandat 3820.380 kb on + strandat 3820.381 kb on - strandat 3820.381 kb on - strandat 3820.385 kb on + strandat 3820.387 kb on + strandat 3820.388 kb on - strandat 3820.389 kb on + strandat 3820.389 kb on + strandat 3820.389 kb on + strandat 3820.389 kb on + strandat 3820.394 kb on + strandat 3820.394 kb on + strandat 3820.394 kb on + strandat 3820.524 kb on + strandat 3820.550 kb on + strandat 3820.553 kb on - strandat 3820.598 kb on + strandat 3820.599 kb on - strandat 3820.822 kb on + strand, within CA264_16425at 3820.822 kb on + strand, within CA264_16425at 3820.822 kb on + strand, within CA264_16425at 3820.823 kb on - strand, within CA264_16425at 3820.823 kb on - strand, within CA264_16425at 3820.823 kb on - strand, within CA264_16425at 3820.824 kb on + strand, within CA264_16425at 3820.824 kb on + strand, within CA264_16425at 3820.825 kb on - strand, within CA264_16425at 3820.838 kb on + strand, within CA264_16425at 3820.838 kb on + strand, within CA264_16425at 3820.839 kb on - strand, within CA264_16425at 3820.842 kb on + strand, within CA264_16425at 3820.843 kb on - strand, within CA264_16425at 3820.870 kb on + strandat 3820.872 kb on + strandat 3820.873 kb on - strandat 3820.873 kb on - strandat 3820.873 kb on - strandat 3820.973 kb on + strandat 3820.976 kb on + strandat 3820.977 kb on - strandat 3821.043 kb on + strandat 3821.044 kb on - strandat 3821.047 kb on - strandat 3821.049 kb on - strandat 3821.227 kb on - strandat 3821.227 kb on - strandat 3821.227 kb on - strandat 3821.270 kb on + strandat 3821.318 kb on + strandat 3821.318 kb on + strandat 3821.319 kb on - strandat 3821.319 kb on - strandat 3821.349 kb on - strand, within CA264_16430at 3821.349 kb on - strand, within CA264_16430at 3821.349 kb on - strand, within CA264_16430at 3821.413 kb on + strand, within CA264_16430at 3821.608 kb on + strand, within CA264_16430at 3821.785 kb on + strand, within CA264_16430at 3821.787 kb on + strand, within CA264_16430at 3821.788 kb on - strand, within CA264_16430at 3821.830 kb on - strand, within CA264_16430

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,819,590 - CA264_16420 0.57 +0.4
3,819,597 - CA264_16420 0.57 +0.3
3,819,597 - CA264_16420 0.57 -0.8
3,819,621 + CA264_16420 0.59 -1.3
3,819,621 + CA264_16420 0.59 +1.0
3,819,621 + CA264_16420 0.59 +3.1
3,819,622 - CA264_16420 0.59 -1.4
3,819,622 - CA264_16420 0.59 +0.1
3,819,622 - CA264_16420 0.59 -0.9
3,819,622 - +3.1
3,819,686 + CA264_16420 0.62 +0.1
3,819,686 + CA264_16420 0.62 +0.4
3,819,687 - CA264_16420 0.62 -0.9
3,819,688 + CA264_16420 0.62 -0.2
3,819,688 + CA264_16420 0.62 +0.6
3,819,689 - CA264_16420 0.62 +0.8
3,819,689 - CA264_16420 0.62 -0.7
3,819,790 + CA264_16420 0.68 +1.0
3,819,790 + CA264_16420 0.68 +0.5
3,819,790 + CA264_16420 0.68 +0.5
3,819,794 + CA264_16420 0.68 +0.5
3,819,794 + CA264_16420 0.68 +0.0
3,819,794 + CA264_16420 0.68 +1.3
3,819,801 + -0.1
3,819,801 + CA264_16420 0.68 -0.2
3,819,801 + CA264_16420 0.68 +0.3
3,819,801 + CA264_16420 0.68 +1.6
3,819,802 - CA264_16420 0.69 -0.1
3,819,802 - CA264_16420 0.69 +0.8
3,819,802 - CA264_16420 0.69 -1.0
3,819,802 - CA264_16420 0.69 +0.3
3,819,803 + CA264_16420 0.69 +1.3
3,819,803 + CA264_16420 0.69 -1.6
3,819,806 + CA264_16420 0.69 +0.5
3,819,855 + CA264_16420 0.71 -0.1
3,819,856 - CA264_16420 0.72 +1.0
3,819,897 - CA264_16420 0.74 -0.5
3,819,971 + CA264_16420 0.78 +0.5
3,819,971 + CA264_16420 0.78 +0.5
3,819,971 + CA264_16420 0.78 -0.8
3,819,972 - CA264_16420 0.78 +0.2
3,819,992 + CA264_16420 0.79 -1.4
3,819,993 - CA264_16420 0.79 +0.0
3,819,993 - CA264_16420 0.79 +0.3
3,820,106 - CA264_16420 0.85 +1.5
3,820,131 - CA264_16420 0.87 -0.0
3,820,173 - CA264_16420 0.89 -0.3
3,820,226 + -0.0
3,820,268 + -0.5
3,820,355 + +0.3
3,820,355 + -0.0
3,820,355 + +0.4
3,820,356 - +0.7
3,820,380 + +0.3
3,820,381 - -0.8
3,820,381 - +0.2
3,820,385 + +0.2
3,820,387 + +0.2
3,820,388 - -0.1
3,820,389 + +0.1
3,820,389 + -1.3
3,820,389 + +0.4
3,820,389 + -0.3
3,820,394 + +0.5
3,820,394 + +0.7
3,820,394 + -0.3
3,820,524 + +0.8
3,820,550 + -0.2
3,820,553 - -0.0
3,820,598 + +0.0
3,820,599 - +0.2
3,820,822 + CA264_16425 0.75 +0.4
3,820,822 + CA264_16425 0.75 +0.5
3,820,822 + CA264_16425 0.75 +0.5
3,820,823 - CA264_16425 0.76 -0.2
3,820,823 - CA264_16425 0.76 +0.6
3,820,823 - CA264_16425 0.76 -0.6
3,820,824 + CA264_16425 0.76 +1.5
3,820,824 + CA264_16425 0.76 -0.1
3,820,825 - CA264_16425 0.76 -0.4
3,820,838 + CA264_16425 0.80 -0.2
3,820,838 + CA264_16425 0.80 +0.2
3,820,839 - CA264_16425 0.81 -0.7
3,820,842 + CA264_16425 0.81 +0.2
3,820,843 - CA264_16425 0.82 +0.7
3,820,870 + -0.1
3,820,872 + +0.1
3,820,873 - -0.1
3,820,873 - +0.3
3,820,873 - +0.5
3,820,973 + -0.2
3,820,976 + +0.3
3,820,977 - +0.3
3,821,043 + +0.6
3,821,044 - -0.0
3,821,047 - +2.2
3,821,049 - -0.1
3,821,227 - -0.7
3,821,227 - -0.1
3,821,227 - -0.1
3,821,270 + +0.4
3,821,318 + +0.4
3,821,318 + +0.3
3,821,319 - -0.3
3,821,319 - +1.6
3,821,349 - CA264_16430 0.11 -0.1
3,821,349 - CA264_16430 0.11 -0.0
3,821,349 - CA264_16430 0.11 +0.0
3,821,413 + CA264_16430 0.14 -0.2
3,821,608 + CA264_16430 0.22 +0.4
3,821,785 + CA264_16430 0.29 -0.2
3,821,787 + CA264_16430 0.30 -0.1
3,821,788 - CA264_16430 0.30 -0.3
3,821,830 - CA264_16430 0.31 -0.3

Or see this region's nucleotide sequence