Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15465

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15455 and CA264_15460 are separated by 233 nucleotidesCA264_15460 and CA264_15465 are separated by 294 nucleotidesCA264_15465 and CA264_15470 are separated by 184 nucleotidesCA264_15470 and CA264_15475 are separated by 87 nucleotides CA264_15455: CA264_15455 - hypothetical protein, at 3,622,769 to 3,622,987 _15455 CA264_15460: CA264_15460 - hypothetical protein, at 3,623,221 to 3,623,625 _15460 CA264_15465: CA264_15465 - glycerol acyltransferase, at 3,623,920 to 3,625,275 _15465 CA264_15470: CA264_15470 - hypothetical protein, at 3,625,460 to 3,625,912 _15470 CA264_15475: CA264_15475 - hypothetical protein, at 3,626,000 to 3,627,520 _15475 Position (kb) 3623 3624 3625 3626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3623.014 kb on + strandat 3623.015 kb on - strandat 3623.065 kb on + strandat 3623.066 kb on - strandat 3623.066 kb on - strandat 3623.066 kb on - strandat 3623.173 kb on + strandat 3623.173 kb on + strandat 3623.181 kb on + strandat 3623.184 kb on + strandat 3623.187 kb on + strandat 3623.242 kb on + strandat 3623.243 kb on - strandat 3623.257 kb on + strandat 3623.257 kb on + strandat 3623.260 kb on + strandat 3623.282 kb on + strand, within CA264_15460at 3623.283 kb on - strand, within CA264_15460at 3623.351 kb on + strand, within CA264_15460at 3623.366 kb on + strand, within CA264_15460at 3623.520 kb on - strand, within CA264_15460at 3623.593 kb on + strandat 3623.612 kb on + strandat 3623.613 kb on - strandat 3623.623 kb on + strandat 3623.641 kb on - strandat 3623.769 kb on - strandat 3623.773 kb on - strandat 3623.822 kb on - strandat 3623.822 kb on - strandat 3623.920 kb on - strandat 3623.926 kb on + strandat 3623.934 kb on - strandat 3624.027 kb on - strandat 3624.054 kb on + strandat 3624.063 kb on + strand, within CA264_15465at 3624.149 kb on + strand, within CA264_15465at 3624.315 kb on + strand, within CA264_15465at 3624.367 kb on - strand, within CA264_15465at 3624.384 kb on - strand, within CA264_15465at 3624.472 kb on + strand, within CA264_15465at 3624.611 kb on - strand, within CA264_15465at 3624.612 kb on + strand, within CA264_15465at 3624.613 kb on - strand, within CA264_15465at 3624.752 kb on + strand, within CA264_15465at 3624.753 kb on - strand, within CA264_15465at 3624.753 kb on - strand, within CA264_15465at 3624.877 kb on + strand, within CA264_15465at 3624.901 kb on + strand, within CA264_15465at 3624.902 kb on - strand, within CA264_15465at 3624.902 kb on - strand, within CA264_15465at 3624.911 kb on - strand, within CA264_15465at 3624.911 kb on - strand, within CA264_15465at 3624.911 kb on - strand, within CA264_15465at 3624.915 kb on + strand, within CA264_15465at 3624.970 kb on - strand, within CA264_15465at 3624.970 kb on - strand, within CA264_15465at 3624.972 kb on + strand, within CA264_15465at 3624.973 kb on - strand, within CA264_15465at 3625.009 kb on + strand, within CA264_15465at 3625.218 kb on + strandat 3625.219 kb on - strandat 3625.230 kb on - strandat 3625.249 kb on + strandat 3625.249 kb on + strandat 3625.250 kb on - strandat 3625.252 kb on - strandat 3625.274 kb on - strandat 3625.315 kb on - strandat 3625.332 kb on + strandat 3625.333 kb on - strandat 3625.340 kb on - strandat 3625.371 kb on + strandat 3625.477 kb on + strandat 3625.478 kb on - strandat 3625.529 kb on - strand, within CA264_15470at 3625.729 kb on + strand, within CA264_15470at 3625.732 kb on + strand, within CA264_15470at 3625.732 kb on + strand, within CA264_15470at 3625.732 kb on + strand, within CA264_15470at 3625.732 kb on + strand, within CA264_15470at 3625.733 kb on - strand, within CA264_15470at 3625.757 kb on - strand, within CA264_15470at 3625.759 kb on + strand, within CA264_15470at 3625.760 kb on - strand, within CA264_15470at 3625.801 kb on + strand, within CA264_15470at 3625.802 kb on - strand, within CA264_15470at 3625.804 kb on + strand, within CA264_15470at 3625.861 kb on + strand, within CA264_15470at 3625.864 kb on + strand, within CA264_15470at 3625.864 kb on + strand, within CA264_15470at 3625.888 kb on + strandat 3625.888 kb on + strandat 3625.888 kb on + strandat 3625.889 kb on - strandat 3625.911 kb on - strandat 3625.917 kb on + strandat 3625.918 kb on - strandat 3625.922 kb on + strandat 3625.922 kb on + strandat 3625.923 kb on - strandat 3625.924 kb on + strandat 3625.988 kb on - strandat 3626.016 kb on + strandat 3626.019 kb on - strandat 3626.040 kb on + strandat 3626.091 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,623,014 + -0.4
3,623,015 - +0.1
3,623,065 + -0.6
3,623,066 - +0.2
3,623,066 - -1.2
3,623,066 - +0.0
3,623,173 + -0.3
3,623,173 + -1.8
3,623,181 + -0.1
3,623,184 + -1.5
3,623,187 + -1.5
3,623,242 + -0.5
3,623,243 - -0.5
3,623,257 + -0.2
3,623,257 + +0.1
3,623,260 + +0.1
3,623,282 + CA264_15460 0.15 +0.0
3,623,283 - CA264_15460 0.15 -0.7
3,623,351 + CA264_15460 0.32 +2.0
3,623,366 + CA264_15460 0.36 -0.6
3,623,520 - CA264_15460 0.74 -0.3
3,623,593 + -0.7
3,623,612 + +0.5
3,623,613 - +0.2
3,623,623 + -0.5
3,623,641 - +0.0
3,623,769 - +0.1
3,623,773 - -0.2
3,623,822 - +0.1
3,623,822 - +0.1
3,623,920 - -0.4
3,623,926 + -0.7
3,623,934 - +0.2
3,624,027 - -0.3
3,624,054 + +0.2
3,624,063 + CA264_15465 0.11 -0.1
3,624,149 + CA264_15465 0.17 -0.3
3,624,315 + CA264_15465 0.29 +0.8
3,624,367 - CA264_15465 0.33 +0.6
3,624,384 - CA264_15465 0.34 +0.1
3,624,472 + CA264_15465 0.41 +0.2
3,624,611 - CA264_15465 0.51 +1.5
3,624,612 + CA264_15465 0.51 -0.5
3,624,613 - CA264_15465 0.51 +0.0
3,624,752 + CA264_15465 0.61 -0.8
3,624,753 - CA264_15465 0.61 -2.8
3,624,753 - CA264_15465 0.61 -0.2
3,624,877 + CA264_15465 0.71 +0.0
3,624,901 + CA264_15465 0.72 +0.4
3,624,902 - CA264_15465 0.72 -0.1
3,624,902 - CA264_15465 0.72 -0.4
3,624,911 - CA264_15465 0.73 +0.0
3,624,911 - CA264_15465 0.73 +0.9
3,624,911 - CA264_15465 0.73 +0.3
3,624,915 + CA264_15465 0.73 -0.3
3,624,970 - CA264_15465 0.77 -0.7
3,624,970 - CA264_15465 0.77 -0.4
3,624,972 + CA264_15465 0.78 +3.3
3,624,973 - CA264_15465 0.78 -0.1
3,625,009 + CA264_15465 0.80 -0.9
3,625,218 + -0.3
3,625,219 - -0.6
3,625,230 - -0.3
3,625,249 + +0.1
3,625,249 + -0.4
3,625,250 - -0.2
3,625,252 - -1.1
3,625,274 - +0.2
3,625,315 - +0.3
3,625,332 + -0.1
3,625,333 - +1.7
3,625,340 - -0.8
3,625,371 + -0.2
3,625,477 + +0.6
3,625,478 - +1.6
3,625,529 - CA264_15470 0.15 -0.7
3,625,729 + CA264_15470 0.59 +0.3
3,625,732 + CA264_15470 0.60 -0.4
3,625,732 + CA264_15470 0.60 +0.1
3,625,732 + CA264_15470 0.60 -0.1
3,625,732 + CA264_15470 0.60 -1.0
3,625,733 - CA264_15470 0.60 +0.0
3,625,757 - CA264_15470 0.66 +0.0
3,625,759 + CA264_15470 0.66 +0.6
3,625,760 - CA264_15470 0.66 +0.8
3,625,801 + CA264_15470 0.75 +0.8
3,625,802 - CA264_15470 0.75 +0.3
3,625,804 + CA264_15470 0.76 +0.2
3,625,861 + CA264_15470 0.89 -0.6
3,625,864 + CA264_15470 0.89 +0.2
3,625,864 + CA264_15470 0.89 -0.6
3,625,888 + +0.2
3,625,888 + -0.8
3,625,888 + +0.0
3,625,889 - -0.6
3,625,911 - +1.5
3,625,917 + +0.0
3,625,918 - -0.4
3,625,922 + -0.5
3,625,922 + +0.0
3,625,923 - +0.2
3,625,924 + -0.1
3,625,988 - -0.1
3,626,016 + -2.6
3,626,019 - +0.6
3,626,040 + -0.1
3,626,091 + +0.1

Or see this region's nucleotide sequence