Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14940

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14930 and CA264_14935 are separated by 4 nucleotidesCA264_14935 and CA264_14940 are separated by 97 nucleotidesCA264_14940 and CA264_14945 are separated by 200 nucleotidesCA264_14945 and CA264_14950 overlap by 26 nucleotides CA264_14930: CA264_14930 - hypothetical protein, at 3,508,717 to 3,509,040 _14930 CA264_14935: CA264_14935 - sec-independent protein translocase TatC, at 3,509,045 to 3,509,437 _14935 CA264_14940: CA264_14940 - hypothetical protein, at 3,509,535 to 3,509,795 _14940 CA264_14945: CA264_14945 - RNA polymerase subunit sigma-24, at 3,509,996 to 3,510,598 _14945 CA264_14950: CA264_14950 - hypothetical protein, at 3,510,573 to 3,510,803 _14950 Position (kb) 3509 3510Strain fitness (log2 ratio) -2 -1 0 1 2at 3508.563 kb on + strandat 3508.641 kb on + strandat 3508.641 kb on + strandat 3508.641 kb on + strandat 3508.641 kb on + strandat 3508.642 kb on - strandat 3508.642 kb on - strandat 3508.642 kb on - strandat 3508.642 kb on - strandat 3508.642 kb on - strandat 3508.691 kb on - strandat 3508.695 kb on + strandat 3508.696 kb on - strandat 3508.739 kb on + strandat 3508.778 kb on - strand, within CA264_14930at 3508.778 kb on - strand, within CA264_14930at 3508.806 kb on + strand, within CA264_14930at 3508.867 kb on - strand, within CA264_14930at 3508.934 kb on - strand, within CA264_14930at 3509.038 kb on + strandat 3509.039 kb on - strandat 3509.092 kb on + strand, within CA264_14935at 3509.092 kb on + strand, within CA264_14935at 3509.093 kb on - strand, within CA264_14935at 3509.099 kb on + strand, within CA264_14935at 3509.099 kb on + strand, within CA264_14935at 3509.100 kb on - strand, within CA264_14935at 3509.187 kb on - strand, within CA264_14935at 3509.226 kb on - strand, within CA264_14935at 3509.435 kb on + strandat 3509.618 kb on + strand, within CA264_14940at 3509.722 kb on + strand, within CA264_14940at 3509.735 kb on + strand, within CA264_14940at 3509.736 kb on - strand, within CA264_14940at 3509.748 kb on - strand, within CA264_14940at 3509.787 kb on + strandat 3509.788 kb on - strandat 3509.788 kb on - strandat 3509.791 kb on + strandat 3509.792 kb on - strandat 3509.792 kb on - strandat 3509.793 kb on + strandat 3509.794 kb on - strandat 3509.802 kb on + strandat 3509.865 kb on - strandat 3509.889 kb on - strandat 3509.900 kb on + strandat 3509.900 kb on + strandat 3509.956 kb on + strandat 3509.956 kb on + strandat 3509.956 kb on + strandat 3509.957 kb on - strandat 3509.963 kb on + strandat 3509.971 kb on + strandat 3509.972 kb on - strandat 3510.031 kb on - strandat 3510.076 kb on - strand, within CA264_14945at 3510.076 kb on - strand, within CA264_14945at 3510.101 kb on + strand, within CA264_14945at 3510.102 kb on - strand, within CA264_14945at 3510.110 kb on - strand, within CA264_14945at 3510.114 kb on + strand, within CA264_14945at 3510.134 kb on + strand, within CA264_14945at 3510.181 kb on + strand, within CA264_14945at 3510.181 kb on + strand, within CA264_14945at 3510.517 kb on + strand, within CA264_14945at 3510.577 kb on + strandat 3510.587 kb on + strandat 3510.609 kb on + strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.610 kb on - strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.613 kb on + strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.614 kb on - strand, within CA264_14950at 3510.662 kb on + strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.663 kb on - strand, within CA264_14950at 3510.679 kb on + strand, within CA264_14950at 3510.718 kb on + strand, within CA264_14950at 3510.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,508,563 + -0.8
3,508,641 + +0.3
3,508,641 + -0.9
3,508,641 + -0.8
3,508,641 + -1.1
3,508,642 - -0.3
3,508,642 - -0.2
3,508,642 - +0.3
3,508,642 - -0.5
3,508,642 - -0.6
3,508,691 - +2.0
3,508,695 + -0.3
3,508,696 - -1.0
3,508,739 + -0.3
3,508,778 - CA264_14930 0.19 -0.2
3,508,778 - CA264_14930 0.19 -0.9
3,508,806 + CA264_14930 0.27 -0.2
3,508,867 - CA264_14930 0.46 -0.3
3,508,934 - CA264_14930 0.67 +0.1
3,509,038 + -0.1
3,509,039 - -0.8
3,509,092 + CA264_14935 0.12 -0.7
3,509,092 + CA264_14935 0.12 +1.0
3,509,093 - CA264_14935 0.12 -0.2
3,509,099 + CA264_14935 0.14 -1.4
3,509,099 + CA264_14935 0.14 -0.3
3,509,100 - CA264_14935 0.14 -0.8
3,509,187 - CA264_14935 0.36 -0.2
3,509,226 - CA264_14935 0.46 -0.1
3,509,435 + +0.2
3,509,618 + CA264_14940 0.32 +0.1
3,509,722 + CA264_14940 0.72 -1.1
3,509,735 + CA264_14940 0.77 -0.3
3,509,736 - CA264_14940 0.77 +0.1
3,509,748 - CA264_14940 0.82 -0.1
3,509,787 + +1.1
3,509,788 - +0.7
3,509,788 - -0.2
3,509,791 + +1.2
3,509,792 - -0.5
3,509,792 - +1.0
3,509,793 + +0.8
3,509,794 - -0.0
3,509,802 + -0.0
3,509,865 - -0.6
3,509,889 - -1.2
3,509,900 + +0.2
3,509,900 + +0.7
3,509,956 + -0.9
3,509,956 + +1.2
3,509,956 + -1.5
3,509,957 - +0.4
3,509,963 + +0.3
3,509,971 + -0.3
3,509,972 - -1.2
3,510,031 - -1.9
3,510,076 - CA264_14945 0.13 -1.0
3,510,076 - CA264_14945 0.13 +0.6
3,510,101 + CA264_14945 0.17 +0.6
3,510,102 - CA264_14945 0.18 -0.1
3,510,110 - CA264_14945 0.19 -0.4
3,510,114 + CA264_14945 0.20 -0.8
3,510,134 + CA264_14945 0.23 +0.1
3,510,181 + CA264_14945 0.31 -0.6
3,510,181 + CA264_14945 0.31 -0.7
3,510,517 + CA264_14945 0.86 +0.1
3,510,577 + -0.2
3,510,587 + +0.5
3,510,609 + CA264_14950 0.16 +0.1
3,510,610 - CA264_14950 0.16 +1.7
3,510,610 - CA264_14950 0.16 -0.6
3,510,610 - CA264_14950 0.16 -0.2
3,510,613 + CA264_14950 0.17 -0.2
3,510,613 + CA264_14950 0.17 +0.6
3,510,613 + CA264_14950 0.17 +0.5
3,510,614 - CA264_14950 0.18 +0.5
3,510,614 - CA264_14950 0.18 -0.5
3,510,614 - CA264_14950 0.18 -0.7
3,510,662 + CA264_14950 0.39 +1.0
3,510,663 - CA264_14950 0.39 -0.3
3,510,663 - CA264_14950 0.39 -0.8
3,510,663 - CA264_14950 0.39 -0.1
3,510,679 + CA264_14950 0.46 -2.2
3,510,718 + CA264_14950 0.63 +0.5
3,510,787 + -0.2

Or see this region's nucleotide sequence