Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13145

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13135 and CA264_13140 are separated by 125 nucleotidesCA264_13140 and CA264_13145 are separated by 123 nucleotidesCA264_13145 and CA264_13150 are separated by 140 nucleotides CA264_13135: CA264_13135 - hypothetical protein, at 3,062,890 to 3,063,603 _13135 CA264_13140: CA264_13140 - hypothetical protein, at 3,063,729 to 3,064,421 _13140 CA264_13145: CA264_13145 - hypothetical protein, at 3,064,545 to 3,065,198 _13145 CA264_13150: CA264_13150 - hypothetical protein, at 3,065,339 to 3,065,869 _13150 Position (kb) 3064 3065 3066Strain fitness (log2 ratio) -2 -1 0 1at 3063.618 kb on - strandat 3063.618 kb on - strandat 3063.707 kb on + strandat 3063.707 kb on + strandat 3063.764 kb on - strandat 3063.764 kb on - strandat 3063.907 kb on - strand, within CA264_13140at 3063.907 kb on - strand, within CA264_13140at 3063.928 kb on + strand, within CA264_13140at 3063.946 kb on + strand, within CA264_13140at 3063.951 kb on + strand, within CA264_13140at 3063.951 kb on + strand, within CA264_13140at 3063.951 kb on + strand, within CA264_13140at 3063.952 kb on - strand, within CA264_13140at 3063.969 kb on - strand, within CA264_13140at 3063.990 kb on + strand, within CA264_13140at 3063.991 kb on - strand, within CA264_13140at 3063.991 kb on - strand, within CA264_13140at 3063.991 kb on - strand, within CA264_13140at 3064.041 kb on - strand, within CA264_13140at 3064.187 kb on - strand, within CA264_13140at 3064.211 kb on - strand, within CA264_13140at 3064.215 kb on - strand, within CA264_13140at 3064.238 kb on + strand, within CA264_13140at 3064.279 kb on + strand, within CA264_13140at 3064.279 kb on + strand, within CA264_13140at 3064.280 kb on - strand, within CA264_13140at 3064.309 kb on - strand, within CA264_13140at 3064.348 kb on + strand, within CA264_13140at 3064.392 kb on - strandat 3064.482 kb on + strandat 3064.483 kb on - strandat 3064.483 kb on - strandat 3064.484 kb on + strandat 3064.502 kb on - strandat 3064.539 kb on + strandat 3064.539 kb on + strandat 3064.539 kb on + strandat 3064.540 kb on - strandat 3064.544 kb on + strandat 3064.544 kb on + strandat 3064.561 kb on + strandat 3064.566 kb on - strandat 3064.792 kb on + strand, within CA264_13145at 3064.792 kb on + strand, within CA264_13145at 3064.793 kb on - strand, within CA264_13145at 3064.843 kb on + strand, within CA264_13145at 3064.887 kb on + strand, within CA264_13145at 3064.978 kb on + strand, within CA264_13145at 3065.018 kb on + strand, within CA264_13145at 3065.204 kb on - strandat 3065.215 kb on - strandat 3065.235 kb on + strandat 3065.239 kb on + strandat 3065.277 kb on - strandat 3065.277 kb on - strandat 3065.277 kb on - strandat 3065.319 kb on - strandat 3065.325 kb on + strandat 3065.338 kb on + strandat 3065.457 kb on + strand, within CA264_13150at 3065.457 kb on + strand, within CA264_13150at 3065.457 kb on + strand, within CA264_13150at 3065.539 kb on + strand, within CA264_13150at 3065.540 kb on - strand, within CA264_13150at 3065.641 kb on - strand, within CA264_13150at 3065.748 kb on + strand, within CA264_13150at 3065.819 kb on + strandat 3065.820 kb on - strandat 3065.862 kb on - strandat 3065.891 kb on - strandat 3065.901 kb on + strandat 3065.955 kb on + strandat 3065.969 kb on - strandat 3066.045 kb on - strandat 3066.074 kb on - strandat 3066.101 kb on + strandat 3066.101 kb on + strandat 3066.109 kb on + strandat 3066.132 kb on - strandat 3066.134 kb on - strandat 3066.143 kb on + strandat 3066.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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3,063,618 - -0.2
3,063,618 - -0.0
3,063,707 + -0.9
3,063,707 + +0.4
3,063,764 - +0.1
3,063,764 - -0.1
3,063,907 - CA264_13140 0.26 -0.1
3,063,907 - CA264_13140 0.26 -0.8
3,063,928 + CA264_13140 0.29 -0.9
3,063,946 + CA264_13140 0.31 +0.1
3,063,951 + CA264_13140 0.32 -0.7
3,063,951 + CA264_13140 0.32 -0.9
3,063,951 + CA264_13140 0.32 +0.1
3,063,952 - CA264_13140 0.32 +1.4
3,063,969 - CA264_13140 0.35 -0.5
3,063,990 + CA264_13140 0.38 -1.0
3,063,991 - CA264_13140 0.38 -0.1
3,063,991 - CA264_13140 0.38 +0.3
3,063,991 - CA264_13140 0.38 +0.1
3,064,041 - CA264_13140 0.45 -1.6
3,064,187 - CA264_13140 0.66 -0.3
3,064,211 - CA264_13140 0.70 -0.2
3,064,215 - CA264_13140 0.70 +0.3
3,064,238 + CA264_13140 0.73 -0.1
3,064,279 + CA264_13140 0.79 +0.2
3,064,279 + CA264_13140 0.79 -0.4
3,064,280 - CA264_13140 0.80 -1.3
3,064,309 - CA264_13140 0.84 -0.1
3,064,348 + CA264_13140 0.89 -1.2
3,064,392 - -0.5
3,064,482 + -0.5
3,064,483 - -0.4
3,064,483 - +0.3
3,064,484 + -0.7
3,064,502 - -0.3
3,064,539 + +0.8
3,064,539 + +0.2
3,064,539 + -0.9
3,064,540 - +0.5
3,064,544 + -0.3
3,064,544 + +0.6
3,064,561 + -0.0
3,064,566 - -0.2
3,064,792 + CA264_13145 0.38 -0.2
3,064,792 + CA264_13145 0.38 +0.4
3,064,793 - CA264_13145 0.38 -0.2
3,064,843 + CA264_13145 0.46 -2.0
3,064,887 + CA264_13145 0.52 -0.1
3,064,978 + CA264_13145 0.66 -0.1
3,065,018 + CA264_13145 0.72 -0.1
3,065,204 - -0.1
3,065,215 - +0.0
3,065,235 + +1.1
3,065,239 + -0.3
3,065,277 - -0.2
3,065,277 - -0.6
3,065,277 - +0.2
3,065,319 - -0.3
3,065,325 + +0.4
3,065,338 + +0.0
3,065,457 + CA264_13150 0.22 +0.4
3,065,457 + CA264_13150 0.22 +0.2
3,065,457 + CA264_13150 0.22 +0.3
3,065,539 + CA264_13150 0.38 -1.1
3,065,540 - CA264_13150 0.38 +0.3
3,065,641 - CA264_13150 0.57 -0.4
3,065,748 + CA264_13150 0.77 +0.5
3,065,819 + -0.2
3,065,820 - +0.4
3,065,862 - +0.3
3,065,891 - -0.3
3,065,901 + -1.2
3,065,955 + +0.1
3,065,969 - -0.3
3,066,045 - -0.7
3,066,074 - -0.4
3,066,101 + +0.1
3,066,101 + +0.6
3,066,109 + +0.3
3,066,132 - -0.3
3,066,134 - +0.3
3,066,143 + +0.3
3,066,192 - -0.0

Or see this region's nucleotide sequence