Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11525

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11515 and CA264_11520 are separated by 261 nucleotidesCA264_11520 and CA264_11525 overlap by 4 nucleotidesCA264_11525 and CA264_11530 are separated by 449 nucleotides CA264_11515: CA264_11515 - RNA polymerase sigma-70 factor, at 2,679,972 to 2,680,532 _11515 CA264_11520: CA264_11520 - hypothetical protein, at 2,680,794 to 2,681,192 _11520 CA264_11525: CA264_11525 - hypothetical protein, at 2,681,189 to 2,681,557 _11525 CA264_11530: CA264_11530 - recombinase XerD, at 2,682,007 to 2,683,305 _11530 Position (kb) 2681 2682Strain fitness (log2 ratio) -2 -1 0 1 2at 2680.190 kb on + strand, within CA264_11515at 2680.190 kb on + strand, within CA264_11515at 2680.190 kb on + strand, within CA264_11515at 2680.191 kb on - strand, within CA264_11515at 2680.191 kb on - strand, within CA264_11515at 2680.216 kb on + strand, within CA264_11515at 2680.268 kb on + strand, within CA264_11515at 2680.268 kb on + strand, within CA264_11515at 2680.268 kb on + strand, within CA264_11515at 2680.320 kb on - strand, within CA264_11515at 2680.321 kb on + strand, within CA264_11515at 2680.321 kb on + strand, within CA264_11515at 2680.322 kb on - strand, within CA264_11515at 2680.328 kb on - strand, within CA264_11515at 2680.358 kb on + strand, within CA264_11515at 2680.450 kb on - strand, within CA264_11515at 2680.459 kb on + strand, within CA264_11515at 2680.466 kb on + strand, within CA264_11515at 2680.484 kb on - strandat 2680.575 kb on - strandat 2680.579 kb on - strandat 2680.581 kb on + strandat 2680.581 kb on + strandat 2680.591 kb on + strandat 2680.625 kb on + strandat 2680.659 kb on - strandat 2680.659 kb on - strandat 2680.715 kb on + strandat 2680.742 kb on + strandat 2680.743 kb on - strandat 2680.745 kb on + strandat 2680.745 kb on + strandat 2680.750 kb on + strandat 2680.751 kb on - strandat 2680.751 kb on - strandat 2680.897 kb on + strand, within CA264_11520at 2680.899 kb on + strand, within CA264_11520at 2680.900 kb on - strand, within CA264_11520at 2681.005 kb on + strand, within CA264_11520at 2681.005 kb on + strand, within CA264_11520at 2681.005 kb on + strand, within CA264_11520at 2681.005 kb on + strand, within CA264_11520at 2681.005 kb on + strand, within CA264_11520at 2681.006 kb on - strand, within CA264_11520at 2681.006 kb on - strand, within CA264_11520at 2681.046 kb on + strand, within CA264_11520at 2681.074 kb on + strand, within CA264_11520at 2681.096 kb on + strand, within CA264_11520at 2681.096 kb on + strand, within CA264_11520at 2681.097 kb on - strand, within CA264_11520at 2681.229 kb on + strand, within CA264_11525at 2681.245 kb on - strand, within CA264_11525at 2681.247 kb on + strand, within CA264_11525at 2681.248 kb on - strand, within CA264_11525at 2681.424 kb on + strand, within CA264_11525at 2681.425 kb on - strand, within CA264_11525at 2681.425 kb on - strand, within CA264_11525at 2681.459 kb on + strand, within CA264_11525at 2681.459 kb on + strand, within CA264_11525at 2681.460 kb on - strand, within CA264_11525at 2681.460 kb on - strand, within CA264_11525at 2681.464 kb on + strand, within CA264_11525at 2681.465 kb on - strand, within CA264_11525at 2681.556 kb on - strandat 2681.608 kb on + strandat 2681.630 kb on - strandat 2681.679 kb on - strandat 2681.767 kb on - strandat 2682.007 kb on - strandat 2682.068 kb on - strandat 2682.075 kb on - strandat 2682.087 kb on + strandat 2682.088 kb on - strandat 2682.091 kb on + strandat 2682.096 kb on - strandat 2682.124 kb on + strandat 2682.389 kb on - strand, within CA264_11530at 2682.391 kb on - strand, within CA264_11530at 2682.391 kb on - strand, within CA264_11530at 2682.408 kb on + strand, within CA264_11530at 2682.530 kb on + strand, within CA264_11530at 2682.534 kb on + strand, within CA264_11530at 2682.534 kb on + strand, within CA264_11530at 2682.534 kb on + strand, within CA264_11530at 2682.535 kb on - strand, within CA264_11530

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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2,680,190 + CA264_11515 0.39 +0.5
2,680,190 + CA264_11515 0.39 -0.4
2,680,190 + CA264_11515 0.39 -0.0
2,680,191 - CA264_11515 0.39 -0.1
2,680,191 - CA264_11515 0.39 +0.1
2,680,216 + CA264_11515 0.43 -0.3
2,680,268 + CA264_11515 0.53 -0.2
2,680,268 + CA264_11515 0.53 -1.0
2,680,268 + CA264_11515 0.53 -0.2
2,680,320 - CA264_11515 0.62 -1.6
2,680,321 + CA264_11515 0.62 -0.5
2,680,321 + CA264_11515 0.62 +0.4
2,680,322 - CA264_11515 0.62 -0.2
2,680,328 - CA264_11515 0.63 +1.2
2,680,358 + CA264_11515 0.69 -1.9
2,680,450 - CA264_11515 0.85 +0.7
2,680,459 + CA264_11515 0.87 -0.3
2,680,466 + CA264_11515 0.88 -0.6
2,680,484 - -0.3
2,680,575 - -0.2
2,680,579 - -1.0
2,680,581 + +0.1
2,680,581 + -0.3
2,680,591 + -0.6
2,680,625 + -0.1
2,680,659 - +0.4
2,680,659 - -1.0
2,680,715 + +0.1
2,680,742 + -0.9
2,680,743 - +0.4
2,680,745 + -0.0
2,680,745 + +0.2
2,680,750 + -0.2
2,680,751 - -0.3
2,680,751 - -0.3
2,680,897 + CA264_11520 0.26 +1.3
2,680,899 + CA264_11520 0.26 -0.4
2,680,900 - CA264_11520 0.27 -0.5
2,681,005 + CA264_11520 0.53 -0.9
2,681,005 + CA264_11520 0.53 +0.4
2,681,005 + CA264_11520 0.53 -0.4
2,681,005 + CA264_11520 0.53 -0.9
2,681,005 + CA264_11520 0.53 +0.0
2,681,006 - CA264_11520 0.53 -0.9
2,681,006 - CA264_11520 0.53 -1.5
2,681,046 + CA264_11520 0.63 -0.5
2,681,074 + CA264_11520 0.70 +0.4
2,681,096 + CA264_11520 0.76 -1.6
2,681,096 + CA264_11520 0.76 -1.9
2,681,097 - CA264_11520 0.76 -0.1
2,681,229 + CA264_11525 0.11 +0.6
2,681,245 - CA264_11525 0.15 +0.1
2,681,247 + CA264_11525 0.16 -0.6
2,681,248 - CA264_11525 0.16 -2.2
2,681,424 + CA264_11525 0.64 -0.5
2,681,425 - CA264_11525 0.64 +0.1
2,681,425 - CA264_11525 0.64 -0.5
2,681,459 + CA264_11525 0.73 +0.1
2,681,459 + CA264_11525 0.73 -1.0
2,681,460 - CA264_11525 0.73 +1.0
2,681,460 - CA264_11525 0.73 +0.3
2,681,464 + CA264_11525 0.75 +1.9
2,681,465 - CA264_11525 0.75 +1.4
2,681,556 - +0.8
2,681,608 + +0.3
2,681,630 - +0.1
2,681,679 - +0.1
2,681,767 - +0.1
2,682,007 - -0.6
2,682,068 - -0.8
2,682,075 - -0.1
2,682,087 + -0.1
2,682,088 - -0.3
2,682,091 + +0.0
2,682,096 - -0.6
2,682,124 + -0.1
2,682,389 - CA264_11530 0.29 -0.8
2,682,391 - CA264_11530 0.30 +0.5
2,682,391 - CA264_11530 0.30 +0.2
2,682,408 + CA264_11530 0.31 -0.2
2,682,530 + CA264_11530 0.40 +0.6
2,682,534 + CA264_11530 0.41 -0.2
2,682,534 + CA264_11530 0.41 -1.5
2,682,534 + CA264_11530 0.41 -0.4
2,682,535 - CA264_11530 0.41 +0.4

Or see this region's nucleotide sequence