Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08840

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08835 and CA264_08840 are separated by 463 nucleotidesCA264_08840 and CA264_08845 are separated by 267 nucleotides CA264_08835: CA264_08835 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 2,063,163 to 2,064,866 _08835 CA264_08840: CA264_08840 - DoxX family membrane protein, at 2,065,330 to 2,065,785 _08840 CA264_08845: CA264_08845 - acyl-CoA synthetase, at 2,066,053 to 2,067,165 _08845 Position (kb) 2065 2066Strain fitness (log2 ratio) -1 0 1at 2064.860 kb on - strandat 2064.903 kb on + strandat 2064.916 kb on + strandat 2064.917 kb on - strandat 2064.953 kb on - strandat 2064.953 kb on - strandat 2064.972 kb on + strandat 2065.019 kb on + strandat 2065.083 kb on + strandat 2065.083 kb on + strandat 2065.084 kb on - strandat 2065.205 kb on + strandat 2065.232 kb on + strandat 2065.232 kb on + strandat 2065.232 kb on + strandat 2065.241 kb on + strandat 2065.260 kb on - strandat 2065.292 kb on + strandat 2065.293 kb on - strandat 2065.403 kb on + strand, within CA264_08840at 2065.443 kb on + strand, within CA264_08840at 2065.443 kb on + strand, within CA264_08840at 2065.506 kb on - strand, within CA264_08840at 2065.509 kb on + strand, within CA264_08840at 2065.510 kb on - strand, within CA264_08840at 2065.525 kb on + strand, within CA264_08840at 2065.525 kb on + strand, within CA264_08840at 2065.654 kb on + strand, within CA264_08840at 2065.949 kb on + strandat 2065.949 kb on + strandat 2065.949 kb on + strandat 2065.949 kb on + strandat 2065.949 kb on + strandat 2065.949 kb on + strandat 2065.950 kb on - strandat 2065.950 kb on - strandat 2065.973 kb on + strandat 2065.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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2,064,860 - +0.3
2,064,903 + +1.7
2,064,916 + -0.5
2,064,917 - +0.5
2,064,953 - -0.2
2,064,953 - +0.8
2,064,972 + -1.2
2,065,019 + -0.1
2,065,083 + +1.0
2,065,083 + +0.7
2,065,084 - -0.1
2,065,205 + -0.2
2,065,232 + -1.7
2,065,232 + +0.0
2,065,232 + -0.5
2,065,241 + +0.1
2,065,260 - -0.1
2,065,292 + +0.1
2,065,293 - -0.0
2,065,403 + CA264_08840 0.16 -0.0
2,065,443 + CA264_08840 0.25 +1.1
2,065,443 + CA264_08840 0.25 +1.1
2,065,506 - CA264_08840 0.39 -0.2
2,065,509 + CA264_08840 0.39 -0.4
2,065,510 - CA264_08840 0.39 +0.1
2,065,525 + CA264_08840 0.43 +0.1
2,065,525 + CA264_08840 0.43 +0.0
2,065,654 + CA264_08840 0.71 +1.1
2,065,949 + -0.6
2,065,949 + -0.8
2,065,949 + -0.2
2,065,949 + +0.1
2,065,949 + +0.5
2,065,949 + -0.2
2,065,950 - -0.0
2,065,950 - +1.3
2,065,973 + +0.0
2,065,973 + +0.1

Or see this region's nucleotide sequence