Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04265

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04260 and CA264_04265 are separated by 274 nucleotidesCA264_04265 and CA264_04270 are separated by 53 nucleotidesCA264_04270 and CA264_04275 are separated by 64 nucleotides CA264_04260: CA264_04260 - NADH-quinone oxidoreductase subunit C/D, at 984,459 to 986,207 _04260 CA264_04265: CA264_04265 - NADH-quinone oxidoreductase subunit B, at 986,482 to 987,120 _04265 CA264_04270: CA264_04270 - NADH:ubiquinone oxidoreductase subunit A, at 987,174 to 987,605 _04270 CA264_04275: CA264_04275 - histidine kinase, at 987,670 to 988,101 _04275 Position (kb) 986 987 988Strain fitness (log2 ratio) -2 -1 0 1 2at 985.513 kb on - strand, within CA264_04260at 985.534 kb on - strand, within CA264_04260at 985.534 kb on - strand, within CA264_04260at 985.662 kb on - strand, within CA264_04260at 985.792 kb on + strand, within CA264_04260at 985.834 kb on + strand, within CA264_04260at 985.835 kb on - strand, within CA264_04260at 985.850 kb on - strand, within CA264_04260at 985.960 kb on + strand, within CA264_04260at 985.961 kb on - strand, within CA264_04260at 985.961 kb on - strand, within CA264_04260at 985.961 kb on - strand, within CA264_04260at 985.961 kb on - strand, within CA264_04260at 985.961 kb on - strand, within CA264_04260at 985.965 kb on - strand, within CA264_04260at 985.970 kb on + strand, within CA264_04260at 985.971 kb on - strand, within CA264_04260at 985.971 kb on - strand, within CA264_04260at 986.035 kb on + strandat 986.232 kb on - strandat 986.234 kb on + strandat 986.234 kb on + strandat 986.234 kb on + strandat 986.235 kb on - strandat 986.235 kb on - strandat 986.235 kb on - strandat 986.235 kb on - strandat 986.239 kb on + strandat 986.240 kb on - strandat 986.240 kb on - strandat 986.348 kb on + strandat 986.349 kb on - strandat 986.387 kb on + strandat 986.388 kb on - strandat 986.388 kb on - strandat 986.389 kb on + strandat 986.389 kb on + strandat 986.390 kb on - strandat 986.393 kb on + strandat 986.394 kb on - strandat 986.461 kb on + strandat 986.462 kb on - strandat 986.463 kb on + strandat 986.463 kb on + strandat 986.464 kb on - strandat 986.464 kb on - strandat 986.464 kb on - strandat 986.471 kb on + strandat 986.472 kb on - strandat 986.483 kb on + strandat 986.483 kb on + strandat 986.483 kb on + strandat 986.484 kb on - strandat 986.484 kb on - strandat 986.484 kb on - strandat 986.484 kb on - strandat 986.684 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.734 kb on - strand, within CA264_04265at 986.832 kb on + strand, within CA264_04265at 986.887 kb on + strand, within CA264_04265at 986.919 kb on - strand, within CA264_04265at 987.059 kb on + strandat 987.135 kb on - strandat 987.146 kb on - strandat 987.164 kb on - strandat 987.164 kb on - strandat 987.164 kb on - strandat 987.166 kb on - strandat 987.166 kb on - strandat 987.168 kb on + strandat 987.168 kb on + strandat 987.169 kb on - strandat 987.206 kb on - strandat 987.265 kb on + strand, within CA264_04270at 987.266 kb on - strand, within CA264_04270at 987.266 kb on - strand, within CA264_04270at 987.406 kb on + strand, within CA264_04270at 987.508 kb on + strand, within CA264_04270at 987.508 kb on + strand, within CA264_04270at 987.509 kb on - strand, within CA264_04270at 987.594 kb on + strandat 987.594 kb on + strandat 987.628 kb on - strandat 987.684 kb on + strandat 987.684 kb on + strandat 987.685 kb on - strandat 987.686 kb on + strandat 987.687 kb on - strandat 987.731 kb on + strand, within CA264_04275at 987.731 kb on + strand, within CA264_04275at 987.732 kb on - strand, within CA264_04275at 987.748 kb on + strand, within CA264_04275at 987.748 kb on + strand, within CA264_04275at 987.749 kb on - strand, within CA264_04275at 987.750 kb on + strand, within CA264_04275at 987.757 kb on + strand, within CA264_04275at 987.758 kb on - strand, within CA264_04275at 987.826 kb on - strand, within CA264_04275at 987.985 kb on + strand, within CA264_04275at 988.028 kb on + strand, within CA264_04275at 988.029 kb on - strand, within CA264_04275

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
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985,513 - CA264_04260 0.60 +1.3
985,534 - CA264_04260 0.61 -0.5
985,534 - CA264_04260 0.61 +0.3
985,662 - CA264_04260 0.69 -0.3
985,792 + CA264_04260 0.76 -0.5
985,834 + CA264_04260 0.79 +0.7
985,835 - CA264_04260 0.79 -0.1
985,850 - CA264_04260 0.80 +0.2
985,960 + CA264_04260 0.86 -0.1
985,961 - CA264_04260 0.86 +1.1
985,961 - CA264_04260 0.86 -1.5
985,961 - CA264_04260 0.86 +0.1
985,961 - CA264_04260 0.86 +0.0
985,961 - CA264_04260 0.86 -0.3
985,965 - CA264_04260 0.86 +0.4
985,970 + CA264_04260 0.86 -0.1
985,971 - CA264_04260 0.86 -0.2
985,971 - CA264_04260 0.86 +0.3
986,035 + -0.5
986,232 - +0.0
986,234 + -0.4
986,234 + +0.7
986,234 + -0.1
986,235 - +0.0
986,235 - +0.6
986,235 - +0.9
986,235 - -0.4
986,239 + +0.2
986,240 - -1.6
986,240 - -0.1
986,348 + -1.2
986,349 - +0.6
986,387 + -0.5
986,388 - +0.2
986,388 - -1.3
986,389 + -0.1
986,389 + +0.2
986,390 - +0.3
986,393 + -0.4
986,394 - +2.1
986,461 + +0.7
986,462 - -0.8
986,463 + -1.4
986,463 + +0.6
986,464 - +0.4
986,464 - +0.1
986,464 - -0.4
986,471 + -0.4
986,472 - -0.2
986,483 + -0.7
986,483 + +0.0
986,483 + -0.9
986,484 - -1.1
986,484 - +0.0
986,484 - +1.0
986,484 - -1.6
986,684 + CA264_04265 0.32 +1.5
986,729 + CA264_04265 0.39 +0.6
986,729 + CA264_04265 0.39 +0.6
986,729 + CA264_04265 0.39 +0.7
986,729 + CA264_04265 0.39 +0.6
986,729 + CA264_04265 0.39 +1.5
986,729 + CA264_04265 0.39 +0.4
986,730 - CA264_04265 0.39 -0.2
986,730 - CA264_04265 0.39 +0.0
986,730 - CA264_04265 0.39 -0.3
986,730 - CA264_04265 0.39 -0.3
986,730 - CA264_04265 0.39 -0.7
986,734 - CA264_04265 0.39 -0.0
986,832 + CA264_04265 0.55 -1.7
986,887 + CA264_04265 0.63 +1.2
986,919 - CA264_04265 0.68 -0.4
987,059 + +0.0
987,135 - -0.1
987,146 - -0.7
987,164 - +0.9
987,164 - -0.1
987,164 - +0.5
987,166 - -0.8
987,166 - -0.2
987,168 + -0.3
987,168 + -0.2
987,169 - +0.2
987,206 - -0.5
987,265 + CA264_04270 0.21 +0.4
987,266 - CA264_04270 0.21 +0.5
987,266 - CA264_04270 0.21 -2.0
987,406 + CA264_04270 0.54 -0.3
987,508 + CA264_04270 0.77 +0.0
987,508 + CA264_04270 0.77 -0.1
987,509 - CA264_04270 0.78 -0.1
987,594 + -0.6
987,594 + -0.2
987,628 - -0.7
987,684 + +0.2
987,684 + +0.5
987,685 - +2.1
987,686 + +0.1
987,687 - -1.4
987,731 + CA264_04275 0.14 -0.2
987,731 + CA264_04275 0.14 -0.0
987,732 - CA264_04275 0.14 -0.2
987,748 + CA264_04275 0.18 -0.4
987,748 + CA264_04275 0.18 +1.0
987,749 - CA264_04275 0.18 +0.1
987,750 + CA264_04275 0.19 +0.0
987,757 + CA264_04275 0.20 -0.6
987,758 - CA264_04275 0.20 +0.9
987,826 - CA264_04275 0.36 -0.2
987,985 + CA264_04275 0.73 +0.9
988,028 + CA264_04275 0.83 -0.4
988,029 - CA264_04275 0.83 -0.1

Or see this region's nucleotide sequence