Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03850

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03845 and CA264_03850 are separated by 159 nucleotidesCA264_03850 and CA264_03855 are separated by 4 nucleotides CA264_03845: CA264_03845 - peptidase M17, at 896,983 to 898,416 _03845 CA264_03850: CA264_03850 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase, at 898,576 to 899,358 _03850 CA264_03855: CA264_03855 - magnesium transporter, at 899,363 to 900,715 _03855 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1at 897.658 kb on + strand, within CA264_03845at 897.658 kb on + strand, within CA264_03845at 897.674 kb on + strand, within CA264_03845at 897.701 kb on + strand, within CA264_03845at 897.701 kb on + strand, within CA264_03845at 897.702 kb on - strand, within CA264_03845at 897.702 kb on - strand, within CA264_03845at 897.811 kb on + strand, within CA264_03845at 897.817 kb on + strand, within CA264_03845at 897.818 kb on - strand, within CA264_03845at 898.003 kb on + strand, within CA264_03845at 898.004 kb on - strand, within CA264_03845at 898.004 kb on - strand, within CA264_03845at 898.005 kb on + strand, within CA264_03845at 898.006 kb on - strand, within CA264_03845at 898.006 kb on - strand, within CA264_03845at 898.006 kb on - strand, within CA264_03845at 898.058 kb on + strand, within CA264_03845at 898.058 kb on + strand, within CA264_03845at 898.059 kb on - strand, within CA264_03845at 898.059 kb on - strand, within CA264_03845at 898.070 kb on + strand, within CA264_03845at 898.088 kb on + strand, within CA264_03845at 898.090 kb on + strand, within CA264_03845at 898.113 kb on + strand, within CA264_03845at 898.135 kb on + strand, within CA264_03845at 898.231 kb on + strand, within CA264_03845at 898.232 kb on - strand, within CA264_03845at 898.236 kb on - strand, within CA264_03845at 898.236 kb on - strand, within CA264_03845at 898.285 kb on + strandat 898.297 kb on + strandat 898.298 kb on - strandat 898.357 kb on - strandat 898.384 kb on + strandat 898.384 kb on + strandat 898.397 kb on + strandat 898.398 kb on - strandat 898.402 kb on - strandat 898.402 kb on - strandat 898.443 kb on + strandat 898.445 kb on + strandat 898.446 kb on - strandat 898.446 kb on - strandat 898.448 kb on + strandat 898.448 kb on + strandat 898.448 kb on + strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.449 kb on - strandat 898.452 kb on + strandat 898.452 kb on + strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.453 kb on - strandat 898.454 kb on + strandat 898.455 kb on - strandat 898.457 kb on + strandat 898.458 kb on - strandat 898.462 kb on - strandat 898.462 kb on - strandat 898.487 kb on - strandat 898.507 kb on - strandat 898.507 kb on - strandat 898.517 kb on + strandat 898.540 kb on + strandat 898.563 kb on + strandat 898.586 kb on + strandat 898.587 kb on - strandat 898.635 kb on - strandat 898.723 kb on + strand, within CA264_03850at 898.824 kb on + strand, within CA264_03850at 898.825 kb on - strand, within CA264_03850at 898.900 kb on + strand, within CA264_03850at 898.901 kb on - strand, within CA264_03850at 898.908 kb on - strand, within CA264_03850at 898.968 kb on + strand, within CA264_03850at 898.968 kb on + strand, within CA264_03850at 898.969 kb on - strand, within CA264_03850at 899.024 kb on - strand, within CA264_03850at 899.068 kb on + strand, within CA264_03850at 899.070 kb on + strand, within CA264_03850at 899.071 kb on - strand, within CA264_03850at 899.356 kb on + strandat 899.357 kb on - strandat 899.370 kb on + strandat 899.388 kb on - strandat 899.440 kb on + strandat 899.440 kb on + strandat 899.441 kb on - strandat 899.441 kb on - strandat 899.443 kb on + strandat 899.443 kb on + strandat 899.444 kb on - strandat 899.473 kb on + strandat 899.487 kb on - strandat 899.624 kb on + strand, within CA264_03855at 899.753 kb on + strand, within CA264_03855at 899.797 kb on + strand, within CA264_03855at 899.798 kb on - strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.882 kb on + strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.883 kb on - strand, within CA264_03855at 899.972 kb on + strand, within CA264_03855at 899.972 kb on + strand, within CA264_03855at 899.986 kb on + strand, within CA264_03855at 899.986 kb on + strand, within CA264_03855at 899.987 kb on - strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.002 kb on + strand, within CA264_03855at 900.003 kb on - strand, within CA264_03855at 900.072 kb on + strand, within CA264_03855at 900.073 kb on - strand, within CA264_03855at 900.073 kb on - strand, within CA264_03855at 900.163 kb on + strand, within CA264_03855at 900.163 kb on + strand, within CA264_03855at 900.220 kb on - strand, within CA264_03855at 900.351 kb on + strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855at 900.352 kb on - strand, within CA264_03855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
remove
897,658 + CA264_03845 0.47 +0.9
897,658 + CA264_03845 0.47 -2.2
897,674 + CA264_03845 0.48 -0.7
897,701 + CA264_03845 0.50 -1.2
897,701 + CA264_03845 0.50 +0.8
897,702 - CA264_03845 0.50 -0.4
897,702 - CA264_03845 0.50 +0.1
897,811 + CA264_03845 0.58 -0.8
897,817 + CA264_03845 0.58 +0.1
897,818 - CA264_03845 0.58 -1.3
898,003 + CA264_03845 0.71 -0.0
898,004 - CA264_03845 0.71 -0.6
898,004 - CA264_03845 0.71 -0.5
898,005 + CA264_03845 0.71 -0.3
898,006 - CA264_03845 0.71 +1.4
898,006 - CA264_03845 0.71 -0.0
898,006 - CA264_03845 0.71 -0.4
898,058 + CA264_03845 0.75 +0.1
898,058 + CA264_03845 0.75 -0.3
898,059 - CA264_03845 0.75 -0.4
898,059 - CA264_03845 0.75 +0.9
898,070 + CA264_03845 0.76 +0.1
898,088 + CA264_03845 0.77 -0.6
898,090 + CA264_03845 0.77 -0.4
898,113 + CA264_03845 0.79 -0.1
898,135 + CA264_03845 0.80 -0.7
898,231 + CA264_03845 0.87 +0.5
898,232 - CA264_03845 0.87 +0.2
898,236 - CA264_03845 0.87 -1.6
898,236 - CA264_03845 0.87 -0.2
898,285 + +0.1
898,297 + -0.3
898,298 - -0.6
898,357 - -0.4
898,384 + +0.7
898,384 + +0.0
898,397 + -0.1
898,398 - +0.3
898,402 - -0.5
898,402 - -0.2
898,443 + -0.5
898,445 + -1.3
898,446 - +0.1
898,446 - -0.8
898,448 + +1.0
898,448 + +0.2
898,448 + -0.5
898,449 - -0.5
898,449 - +0.4
898,449 - -1.0
898,449 - +0.6
898,449 - -0.1
898,452 + -0.5
898,452 + -0.5
898,453 - +0.3
898,453 - +0.6
898,453 - -0.7
898,454 + +0.0
898,455 - -0.3
898,457 + +1.5
898,458 - -0.9
898,462 - +0.5
898,462 - -0.0
898,487 - -0.2
898,507 - -1.5
898,507 - +0.5
898,517 + +0.6
898,540 + -0.2
898,563 + -0.1
898,586 + +0.5
898,587 - -0.0
898,635 - -0.2
898,723 + CA264_03850 0.19 -0.4
898,824 + CA264_03850 0.32 -0.8
898,825 - CA264_03850 0.32 -0.6
898,900 + CA264_03850 0.41 +1.0
898,901 - CA264_03850 0.42 +0.2
898,908 - CA264_03850 0.42 +1.0
898,968 + CA264_03850 0.50 -0.5
898,968 + CA264_03850 0.50 -1.7
898,969 - CA264_03850 0.50 -1.9
899,024 - CA264_03850 0.57 +0.0
899,068 + CA264_03850 0.63 -0.1
899,070 + CA264_03850 0.63 -0.3
899,071 - CA264_03850 0.63 -0.5
899,356 + -0.5
899,357 - +0.4
899,370 + +0.3
899,388 - -0.3
899,440 + -0.5
899,440 + -0.6
899,441 - +0.2
899,441 - +0.9
899,443 + +0.5
899,443 + -1.5
899,444 - -0.4
899,473 + -1.2
899,487 - -0.6
899,624 + CA264_03855 0.19 -0.3
899,753 + CA264_03855 0.29 +0.0
899,797 + CA264_03855 0.32 -0.7
899,798 - CA264_03855 0.32 -0.4
899,882 + CA264_03855 0.38 -1.5
899,882 + CA264_03855 0.38 -1.3
899,882 + CA264_03855 0.38 -0.1
899,882 + CA264_03855 0.38 -1.2
899,883 - CA264_03855 0.38 -0.2
899,883 - CA264_03855 0.38 -0.8
899,883 - CA264_03855 0.38 -0.8
899,883 - CA264_03855 0.38 -0.8
899,972 + CA264_03855 0.45 -0.7
899,972 + CA264_03855 0.45 -1.6
899,986 + CA264_03855 0.46 -0.5
899,986 + CA264_03855 0.46 -1.6
899,987 - CA264_03855 0.46 -1.0
900,002 + CA264_03855 0.47 -1.5
900,002 + CA264_03855 0.47 -2.3
900,002 + CA264_03855 0.47 -1.0
900,003 - CA264_03855 0.47 -0.7
900,072 + CA264_03855 0.52 -1.8
900,073 - CA264_03855 0.52 -1.1
900,073 - CA264_03855 0.52 -2.7
900,163 + CA264_03855 0.59 -0.1
900,163 + CA264_03855 0.59 -0.2
900,220 - CA264_03855 0.63 -1.0
900,351 + CA264_03855 0.73 -0.9
900,352 - CA264_03855 0.73 -0.0
900,352 - CA264_03855 0.73 -1.6

Or see this region's nucleotide sequence