Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03820

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03815 and CA264_03820 are separated by 216 nucleotidesCA264_03820 and CA264_03825 are separated by 137 nucleotides CA264_03815: CA264_03815 - peptidoglycan-binding protein, at 891,768 to 892,748 _03815 CA264_03820: CA264_03820 - ketoacyl-ACP synthase III, at 892,965 to 893,963 _03820 CA264_03825: CA264_03825 - phosphate acyltransferase PlsX, at 894,101 to 895,042 _03825 Position (kb) 892 893 894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 891.985 kb on + strand, within CA264_03815at 892.122 kb on - strand, within CA264_03815at 892.291 kb on - strand, within CA264_03815at 892.446 kb on + strand, within CA264_03815at 892.539 kb on + strand, within CA264_03815at 892.539 kb on + strand, within CA264_03815at 892.737 kb on + strandat 892.877 kb on + strandat 892.947 kb on - strandat 892.947 kb on - strandat 892.948 kb on + strandat 892.952 kb on + strandat 892.978 kb on + strandat 892.979 kb on - strandat 894.024 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
remove
891,985 + CA264_03815 0.22 -3.3
892,122 - CA264_03815 0.36 -1.0
892,291 - CA264_03815 0.53 -4.0
892,446 + CA264_03815 0.69 -3.1
892,539 + CA264_03815 0.79 -2.3
892,539 + CA264_03815 0.79 -2.3
892,737 + -2.9
892,877 + +0.6
892,947 - -0.5
892,947 - +0.2
892,948 + -0.9
892,952 + -0.8
892,978 + -0.6
892,979 - -1.6
894,024 + -0.7

Or see this region's nucleotide sequence