Experiment: m.b. Dimethyl Sulfoxide 10 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03600 and CA264_03605 are separated by 287 nucleotides CA264_03605 and CA264_03610 are separated by 69 nucleotides CA264_03610 and CA264_03615 are separated by 133 nucleotides CA264_03615 and CA264_03620 are separated by 513 nucleotides
CA264_03600: CA264_03600 - ATP-dependent helicase HrpB, at 838,914 to 841,460
_03600
CA264_03605: CA264_03605 - DNA-binding protein, at 841,748 to 842,206
_03605
CA264_03610: CA264_03610 - hypothetical protein, at 842,276 to 842,503
_03610
CA264_03615: CA264_03615 - cold-shock protein, at 842,637 to 842,828
_03615
CA264_03620: CA264_03620 - acyl-CoA desaturase, at 843,342 to 844,457
_03620
Position (kb)
842
843 Strain fitness (log2 ratio)
-2
-1
0
1 at 841.338 kb on - strand at 841.460 kb on + strand at 841.461 kb on - strand at 841.461 kb on - strand at 841.461 kb on - strand at 841.521 kb on - strand at 841.574 kb on + strand at 841.670 kb on + strand at 841.671 kb on - strand at 841.682 kb on + strand at 841.683 kb on - strand at 841.683 kb on - strand at 841.683 kb on - strand at 841.684 kb on + strand at 841.685 kb on - strand at 841.707 kb on + strand at 841.746 kb on - strand at 841.750 kb on - strand at 842.004 kb on - strand, within CA264_03605 at 842.051 kb on - strand, within CA264_03605 at 842.067 kb on + strand, within CA264_03605 at 842.232 kb on - strand at 842.232 kb on - strand at 842.234 kb on + strand at 842.238 kb on - strand at 842.239 kb on + strand at 842.240 kb on - strand at 842.240 kb on - strand at 842.255 kb on + strand at 842.263 kb on + strand at 842.263 kb on + strand at 842.277 kb on + strand at 842.278 kb on - strand at 842.396 kb on - strand, within CA264_03610 at 842.446 kb on + strand, within CA264_03610 at 842.447 kb on - strand, within CA264_03610 at 842.453 kb on + strand, within CA264_03610 at 842.453 kb on + strand, within CA264_03610 at 842.454 kb on - strand, within CA264_03610 at 842.463 kb on + strand, within CA264_03610 at 842.486 kb on + strand at 842.514 kb on + strand at 842.515 kb on - strand at 842.604 kb on + strand at 842.605 kb on - strand at 842.615 kb on + strand at 842.618 kb on - strand at 842.618 kb on - strand at 842.625 kb on - strand at 842.625 kb on - strand at 842.627 kb on + strand at 842.632 kb on + strand at 842.632 kb on + strand at 842.632 kb on + strand at 842.632 kb on + strand at 842.648 kb on + strand at 842.725 kb on - strand, within CA264_03615 at 842.736 kb on + strand, within CA264_03615 at 842.742 kb on + strand, within CA264_03615 at 842.743 kb on - strand, within CA264_03615 at 842.749 kb on + strand, within CA264_03615 at 842.775 kb on - strand, within CA264_03615 at 842.844 kb on - strand at 842.844 kb on - strand at 842.845 kb on + strand at 842.845 kb on + strand at 842.851 kb on + strand at 842.851 kb on + strand at 842.852 kb on - strand at 842.852 kb on - strand at 842.854 kb on + strand at 842.871 kb on - strand at 842.872 kb on + strand at 842.931 kb on - strand at 842.974 kb on + strand at 843.139 kb on - strand at 843.157 kb on + strand at 843.158 kb on - strand at 843.160 kb on - strand at 843.204 kb on + strand at 843.331 kb on - strand at 843.339 kb on + strand at 843.339 kb on + strand at 843.340 kb on - strand at 843.340 kb on - strand at 843.365 kb on + strand at 843.497 kb on - strand, within CA264_03620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol% remove 841,338 - +0.6 841,460 + +0.1 841,461 - -0.1 841,461 - -0.6 841,461 - +0.7 841,521 - +1.3 841,574 + +0.2 841,670 + -0.3 841,671 - -1.0 841,682 + -0.8 841,683 - -1.0 841,683 - +0.4 841,683 - -1.7 841,684 + +1.6 841,685 - -0.2 841,707 + -0.2 841,746 - -0.6 841,750 - +0.0 842,004 - CA264_03605 0.56 -0.4 842,051 - CA264_03605 0.66 -0.4 842,067 + CA264_03605 0.69 -1.8 842,232 - +1.2 842,232 - -0.6 842,234 + -0.4 842,238 - -0.5 842,239 + -0.1 842,240 - +0.2 842,240 - -0.9 842,255 + -0.2 842,263 + -2.3 842,263 + -0.4 842,277 + -0.5 842,278 - +0.0 842,396 - CA264_03610 0.53 -1.0 842,446 + CA264_03610 0.75 -1.5 842,447 - CA264_03610 0.75 +1.1 842,453 + CA264_03610 0.78 -0.5 842,453 + CA264_03610 0.78 -0.1 842,454 - CA264_03610 0.78 -1.2 842,463 + CA264_03610 0.82 -1.6 842,486 + +0.0 842,514 + +0.2 842,515 - -1.6 842,604 + -0.3 842,605 - -1.1 842,615 + +1.1 842,618 - -0.3 842,618 - -1.3 842,625 - -0.3 842,625 - -0.3 842,627 + -0.5 842,632 + +0.3 842,632 + -0.2 842,632 + -0.3 842,632 + +0.2 842,648 + -1.3 842,725 - CA264_03615 0.46 +0.1 842,736 + CA264_03615 0.52 -0.5 842,742 + CA264_03615 0.55 +1.0 842,743 - CA264_03615 0.55 -1.0 842,749 + CA264_03615 0.58 +0.1 842,775 - CA264_03615 0.72 -0.4 842,844 - -0.6 842,844 - -2.5 842,845 + -0.3 842,845 + +0.3 842,851 + +0.3 842,851 + +0.8 842,852 - -0.2 842,852 - -1.0 842,854 + -2.1 842,871 - -0.6 842,872 + -0.3 842,931 - -0.3 842,974 + +0.3 843,139 - -0.7 843,157 + +0.6 843,158 - -0.4 843,160 - -0.2 843,204 + +0.2 843,331 - -0.1 843,339 + +0.1 843,339 + -0.0 843,340 - -1.0 843,340 - +0.8 843,365 + +0.6 843,497 - CA264_03620 0.14 +0.1
Or see this region's nucleotide sequence