Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00720

Experiment: m.b. Dimethyl Sulfoxide 10 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00715 and CA264_00720 are separated by 195 nucleotidesCA264_00720 and CA264_00725 are separated by 391 nucleotides CA264_00715: CA264_00715 - hypothetical protein, at 154,645 to 155,742 _00715 CA264_00720: CA264_00720 - 30S ribosomal protein S20, at 155,938 to 156,195 _00720 CA264_00725: CA264_00725 - pyruvate kinase, at 156,587 to 158,014 _00725 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1at 154.977 kb on + strand, within CA264_00715at 155.097 kb on + strand, within CA264_00715at 155.142 kb on - strand, within CA264_00715at 155.150 kb on + strand, within CA264_00715at 155.169 kb on + strand, within CA264_00715at 155.170 kb on - strand, within CA264_00715at 155.204 kb on - strand, within CA264_00715at 155.308 kb on + strand, within CA264_00715at 155.319 kb on + strand, within CA264_00715at 155.320 kb on - strand, within CA264_00715at 155.320 kb on - strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.659 kb on + strandat 155.727 kb on - strandat 155.730 kb on + strandat 155.743 kb on - strandat 155.788 kb on - strandat 155.822 kb on + strandat 155.822 kb on + strandat 155.823 kb on - strandat 156.193 kb on + strandat 156.230 kb on + strandat 156.277 kb on + strandat 156.283 kb on + strandat 156.284 kb on - strandat 156.330 kb on + strandat 156.401 kb on - strandat 156.413 kb on + strandat 156.414 kb on - strandat 156.414 kb on - strandat 156.417 kb on + strandat 156.418 kb on - strandat 156.424 kb on + strandat 156.506 kb on - strandat 156.516 kb on - strandat 156.519 kb on - strandat 156.520 kb on + strandat 156.521 kb on - strandat 156.521 kb on - strandat 156.564 kb on + strandat 156.569 kb on + strandat 156.570 kb on - strandat 156.570 kb on - strandat 156.570 kb on - strandat 156.599 kb on + strandat 156.599 kb on + strandat 156.600 kb on - strandat 156.673 kb on + strandat 156.673 kb on + strandat 156.674 kb on - strandat 156.679 kb on - strandat 156.949 kb on + strand, within CA264_00725at 156.987 kb on - strand, within CA264_00725at 157.005 kb on - strand, within CA264_00725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 10 vol%
remove
154,977 + CA264_00715 0.30 +0.1
155,097 + CA264_00715 0.41 +1.4
155,142 - CA264_00715 0.45 +0.2
155,150 + CA264_00715 0.46 -0.3
155,169 + CA264_00715 0.48 -1.5
155,170 - CA264_00715 0.48 -0.3
155,204 - CA264_00715 0.51 -0.4
155,308 + CA264_00715 0.60 -0.7
155,319 + CA264_00715 0.61 -1.0
155,320 - CA264_00715 0.61 +0.8
155,320 - CA264_00715 0.61 -0.4
155,598 + CA264_00715 0.87 -0.5
155,598 + CA264_00715 0.87 +0.5
155,598 + CA264_00715 0.87 -0.7
155,659 + -0.4
155,727 - -1.1
155,730 + -1.2
155,743 - +0.1
155,788 - -0.2
155,822 + +0.3
155,822 + -0.2
155,823 - +0.4
156,193 + +0.5
156,230 + -0.9
156,277 + +0.6
156,283 + -0.7
156,284 - -0.2
156,330 + -0.9
156,401 - -1.5
156,413 + -0.8
156,414 - -0.2
156,414 - -0.9
156,417 + -0.3
156,418 - +0.7
156,424 + -0.1
156,506 - -0.4
156,516 - -0.4
156,519 - +0.9
156,520 + -0.5
156,521 - -0.3
156,521 - -0.1
156,564 + +0.3
156,569 + +0.0
156,570 - -0.8
156,570 - -0.2
156,570 - -0.5
156,599 + -1.8
156,599 + -1.9
156,600 - +0.1
156,673 + -1.3
156,673 + -2.1
156,674 - +0.8
156,679 - -2.2
156,949 + CA264_00725 0.25 -0.0
156,987 - CA264_00725 0.28 -0.8
157,005 - CA264_00725 0.29 -1.7

Or see this region's nucleotide sequence