Experiment: Nalidixic 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15285 and PS417_15290 are separated by 16 nucleotides PS417_15290 and PS417_15295 are separated by 41 nucleotides PS417_15295 and PS417_15300 overlap by 4 nucleotides
PS417_15285: PS417_15285 - type VI secretion protein, at 3,353,220 to 3,354,392
_15285
PS417_15290: PS417_15290 - type VI secretion protein, at 3,354,409 to 3,354,540
_15290
PS417_15295: PS417_15295 - Fis family transcriptional regulator, at 3,354,582 to 3,356,114
_15295
PS417_15300: PS417_15300 - ATPase AAA, at 3,356,111 to 3,358,543
_15300
Position (kb)
3354
3355
3356
3357 Strain fitness (log2 ratio)
-1
0
1 at 3354.385 kb on - strand at 3354.385 kb on - strand at 3354.473 kb on + strand, within PS417_15290 at 3354.473 kb on + strand, within PS417_15290 at 3354.474 kb on - strand, within PS417_15290 at 3354.545 kb on + strand at 3354.545 kb on + strand at 3354.546 kb on - strand at 3354.887 kb on - strand, within PS417_15295 at 3355.042 kb on + strand, within PS417_15295 at 3355.045 kb on + strand at 3355.046 kb on - strand, within PS417_15295 at 3355.446 kb on + strand, within PS417_15295 at 3355.569 kb on - strand, within PS417_15295 at 3355.831 kb on - strand, within PS417_15295 at 3355.889 kb on + strand, within PS417_15295 at 3355.994 kb on + strand at 3356.251 kb on + strand at 3356.251 kb on + strand at 3356.314 kb on + strand at 3356.314 kb on + strand at 3356.342 kb on + strand at 3356.342 kb on + strand at 3356.368 kb on + strand, within PS417_15300 at 3356.369 kb on - strand, within PS417_15300 at 3356.840 kb on + strand, within PS417_15300 at 3356.840 kb on + strand, within PS417_15300 at 3356.906 kb on + strand, within PS417_15300 at 3356.907 kb on - strand, within PS417_15300
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.015 mg/ml remove 3,354,385 - +1.4 3,354,385 - +0.3 3,354,473 + PS417_15290 0.48 +0.1 3,354,473 + PS417_15290 0.48 +0.1 3,354,474 - PS417_15290 0.49 +1.0 3,354,545 + -0.5 3,354,545 + -0.0 3,354,546 - +0.4 3,354,887 - PS417_15295 0.20 +0.0 3,355,042 + PS417_15295 0.30 +1.0 3,355,045 + +0.4 3,355,046 - PS417_15295 0.30 +0.8 3,355,446 + PS417_15295 0.56 +0.5 3,355,569 - PS417_15295 0.64 +0.4 3,355,831 - PS417_15295 0.81 +0.7 3,355,889 + PS417_15295 0.85 -0.4 3,355,994 + -0.3 3,356,251 + +0.4 3,356,251 + +0.6 3,356,314 + +0.1 3,356,314 + +0.3 3,356,342 + +1.0 3,356,342 + -0.7 3,356,368 + PS417_15300 0.11 -0.4 3,356,369 - PS417_15300 0.11 +0.3 3,356,840 + PS417_15300 0.30 -0.6 3,356,840 + PS417_15300 0.30 +0.1 3,356,906 + PS417_15300 0.33 +0.1 3,356,907 - PS417_15300 0.33 -0.3
Or see this region's nucleotide sequence