Strain Fitness in Pseudomonas simiae WCS417 around PS417_07110

Experiment: Nalidixic 0.015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_07100 and PS417_07105 are separated by 140 nucleotidesPS417_07105 and PS417_07110 overlap by 17 nucleotidesPS417_07110 and PS417_07115 overlap by 32 nucleotides PS417_07100: PS417_07100 - aminomethyltransferase, at 1,571,193 to 1,572,134 _07100 PS417_07105: PS417_07105 - hypothetical protein, at 1,572,275 to 1,572,529 _07105 PS417_07110: PS417_07110 - hypothetical protein, at 1,572,513 to 1,572,959 _07110 PS417_07115: PS417_07115 - L-aspartate oxidase, at 1,572,928 to 1,574,544 _07115 Position (kb) 1572 1573Strain fitness (log2 ratio) -1 0 1at 1572.170 kb on + strandat 1572.170 kb on + strandat 1572.170 kb on + strandat 1572.170 kb on + strandat 1572.193 kb on + strandat 1572.193 kb on + strandat 1572.246 kb on - strandat 1572.246 kb on - strandat 1572.247 kb on + strandat 1572.247 kb on + strandat 1572.527 kb on + strandat 1572.528 kb on - strandat 1572.528 kb on - strandat 1572.530 kb on + strandat 1572.576 kb on + strand, within PS417_07110at 1572.631 kb on - strand, within PS417_07110at 1572.631 kb on - strand, within PS417_07110at 1572.631 kb on - strand, within PS417_07110at 1572.689 kb on + strand, within PS417_07110at 1573.001 kb on + strandat 1573.001 kb on + strandat 1573.103 kb on + strand, within PS417_07115at 1573.103 kb on + strand, within PS417_07115at 1573.103 kb on + strand, within PS417_07115at 1573.104 kb on - strand, within PS417_07115at 1573.104 kb on - strand, within PS417_07115at 1573.107 kb on + strand, within PS417_07115at 1573.107 kb on + strand, within PS417_07115at 1573.113 kb on - strand, within PS417_07115at 1573.196 kb on + strand, within PS417_07115at 1573.197 kb on - strand, within PS417_07115at 1573.197 kb on - strand, within PS417_07115at 1573.230 kb on + strand, within PS417_07115at 1573.230 kb on + strand, within PS417_07115at 1573.433 kb on + strand, within PS417_07115at 1573.433 kb on + strand, within PS417_07115at 1573.433 kb on + strand, within PS417_07115at 1573.434 kb on - strand, within PS417_07115at 1573.800 kb on - strand, within PS417_07115at 1573.906 kb on - strand, within PS417_07115at 1573.907 kb on + strand, within PS417_07115at 1573.908 kb on - strand, within PS417_07115at 1573.908 kb on - strand, within PS417_07115at 1573.908 kb on - strand, within PS417_07115at 1573.914 kb on - strand, within PS417_07115at 1573.914 kb on - strand, within PS417_07115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.015 mg/ml
remove
1,572,170 + +0.1
1,572,170 + +0.0
1,572,170 + -0.4
1,572,170 + -0.4
1,572,193 + -0.7
1,572,193 + -0.1
1,572,246 - -0.4
1,572,246 - +0.2
1,572,247 + +0.3
1,572,247 + -0.2
1,572,527 + +1.0
1,572,528 - +0.0
1,572,528 - +1.0
1,572,530 + +0.5
1,572,576 + PS417_07110 0.14 -0.4
1,572,631 - PS417_07110 0.26 +1.6
1,572,631 - PS417_07110 0.26 +1.5
1,572,631 - PS417_07110 0.26 +0.4
1,572,689 + PS417_07110 0.39 +0.3
1,573,001 + -1.1
1,573,001 + -1.5
1,573,103 + PS417_07115 0.11 +0.0
1,573,103 + PS417_07115 0.11 +0.4
1,573,103 + PS417_07115 0.11 -0.0
1,573,104 - PS417_07115 0.11 -0.2
1,573,104 - PS417_07115 0.11 +0.0
1,573,107 + PS417_07115 0.11 +1.0
1,573,107 + PS417_07115 0.11 -0.5
1,573,113 - PS417_07115 0.11 -0.2
1,573,196 + PS417_07115 0.17 -0.1
1,573,197 - PS417_07115 0.17 -0.7
1,573,197 - PS417_07115 0.17 +0.3
1,573,230 + PS417_07115 0.19 +1.6
1,573,230 + PS417_07115 0.19 -0.2
1,573,433 + PS417_07115 0.31 -1.0
1,573,433 + PS417_07115 0.31 -0.1
1,573,433 + PS417_07115 0.31 -0.3
1,573,434 - PS417_07115 0.31 -0.6
1,573,800 - PS417_07115 0.54 +0.7
1,573,906 - PS417_07115 0.60 +0.0
1,573,907 + PS417_07115 0.61 -0.2
1,573,908 - PS417_07115 0.61 -0.0
1,573,908 - PS417_07115 0.61 +0.0
1,573,908 - PS417_07115 0.61 -1.3
1,573,914 - PS417_07115 0.61 +0.1
1,573,914 - PS417_07115 0.61 +0.0

Or see this region's nucleotide sequence