Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4054 and Echvi_4055 are separated by 12 nucleotides Echvi_4055 and Echvi_4056 are separated by 2 nucleotides Echvi_4056 and Echvi_4057 are separated by 844 nucleotides
Echvi_4054: Echvi_4054 - hypothetical protein, at 4,862,154 to 4,862,645
_4054
Echvi_4055: Echvi_4055 - Uncharacterized protein involved in copper resistance, at 4,862,658 to 4,863,401
_4055
Echvi_4056: Echvi_4056 - Asparaginase, at 4,863,404 to 4,864,387
_4056
Echvi_4057: Echvi_4057 - hypothetical protein, at 4,865,232 to 4,867,073
_4057
Position (kb)
4863
4864
4865 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4862.416 kb on + strand, within Echvi_4054 at 4862.416 kb on + strand, within Echvi_4054 at 4862.420 kb on + strand, within Echvi_4054 at 4862.420 kb on + strand, within Echvi_4054 at 4862.421 kb on - strand, within Echvi_4054 at 4862.455 kb on + strand, within Echvi_4054 at 4862.553 kb on + strand, within Echvi_4054 at 4862.554 kb on - strand, within Echvi_4054 at 4862.554 kb on - strand, within Echvi_4054 at 4862.592 kb on + strand, within Echvi_4054 at 4862.600 kb on + strand at 4862.601 kb on - strand at 4862.621 kb on + strand at 4862.624 kb on - strand at 4862.637 kb on + strand at 4862.659 kb on + strand at 4862.879 kb on + strand, within Echvi_4055 at 4862.897 kb on + strand, within Echvi_4055 at 4862.898 kb on - strand, within Echvi_4055 at 4862.957 kb on + strand, within Echvi_4055 at 4863.151 kb on - strand, within Echvi_4055 at 4863.262 kb on + strand, within Echvi_4055 at 4863.396 kb on - strand at 4863.413 kb on - strand at 4863.459 kb on + strand at 4863.460 kb on - strand at 4863.463 kb on + strand at 4863.463 kb on + strand at 4863.463 kb on + strand at 4863.463 kb on + strand at 4863.464 kb on - strand at 4863.464 kb on - strand at 4863.505 kb on + strand, within Echvi_4056 at 4863.621 kb on - strand, within Echvi_4056 at 4863.702 kb on + strand, within Echvi_4056 at 4863.703 kb on - strand, within Echvi_4056 at 4863.751 kb on + strand, within Echvi_4056 at 4863.766 kb on + strand, within Echvi_4056 at 4863.772 kb on + strand, within Echvi_4056 at 4863.773 kb on - strand, within Echvi_4056 at 4863.773 kb on - strand, within Echvi_4056 at 4863.809 kb on + strand, within Echvi_4056 at 4863.810 kb on - strand, within Echvi_4056 at 4863.810 kb on - strand, within Echvi_4056 at 4863.818 kb on + strand, within Echvi_4056 at 4863.819 kb on - strand, within Echvi_4056 at 4863.824 kb on - strand, within Echvi_4056 at 4863.853 kb on + strand, within Echvi_4056 at 4863.855 kb on + strand, within Echvi_4056 at 4863.865 kb on + strand, within Echvi_4056 at 4863.866 kb on - strand, within Echvi_4056 at 4863.883 kb on - strand, within Echvi_4056 at 4863.920 kb on + strand, within Echvi_4056 at 4863.920 kb on + strand, within Echvi_4056 at 4863.952 kb on + strand, within Echvi_4056 at 4864.043 kb on + strand, within Echvi_4056 at 4864.044 kb on - strand, within Echvi_4056 at 4864.075 kb on + strand, within Echvi_4056 at 4864.075 kb on + strand, within Echvi_4056 at 4864.075 kb on + strand, within Echvi_4056 at 4864.096 kb on + strand, within Echvi_4056 at 4864.097 kb on - strand, within Echvi_4056 at 4864.176 kb on - strand, within Echvi_4056 at 4864.228 kb on + strand, within Echvi_4056 at 4864.228 kb on + strand, within Echvi_4056 at 4864.308 kb on - strand at 4864.331 kb on + strand at 4864.379 kb on - strand at 4864.412 kb on - strand at 4864.446 kb on + strand at 4864.518 kb on + strand at 4864.574 kb on - strand at 4864.686 kb on - strand at 4864.771 kb on + strand at 4864.772 kb on - strand at 4864.772 kb on - strand at 4864.777 kb on + strand at 4864.777 kb on + strand at 4864.807 kb on + strand at 4864.808 kb on - strand at 4864.827 kb on + strand at 4864.870 kb on + strand at 4864.870 kb on + strand at 4864.939 kb on + strand at 4864.945 kb on + strand at 4864.965 kb on + strand at 4864.966 kb on + strand at 4864.966 kb on + strand at 4864.967 kb on - strand at 4865.024 kb on - strand at 4865.086 kb on - strand at 4865.156 kb on + strand at 4865.214 kb on - strand at 4865.237 kb on + strand at 4865.250 kb on - strand at 4865.250 kb on - strand at 4865.276 kb on + strand at 4865.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,862,416 + Echvi_4054 0.53 +1.2 4,862,416 + Echvi_4054 0.53 -0.1 4,862,420 + Echvi_4054 0.54 +0.4 4,862,420 + Echvi_4054 0.54 -1.5 4,862,421 - Echvi_4054 0.54 -0.6 4,862,455 + Echvi_4054 0.61 -0.9 4,862,553 + Echvi_4054 0.81 -2.8 4,862,554 - Echvi_4054 0.81 +0.1 4,862,554 - Echvi_4054 0.81 -3.2 4,862,592 + Echvi_4054 0.89 +0.7 4,862,600 + -0.6 4,862,601 - -0.8 4,862,621 + -0.4 4,862,624 - -0.1 4,862,637 + -0.4 4,862,659 + +0.3 4,862,879 + Echvi_4055 0.30 -0.9 4,862,897 + Echvi_4055 0.32 +0.4 4,862,898 - Echvi_4055 0.32 +1.2 4,862,957 + Echvi_4055 0.40 -0.8 4,863,151 - Echvi_4055 0.66 -1.3 4,863,262 + Echvi_4055 0.81 +1.5 4,863,396 - -0.1 4,863,413 - -0.5 4,863,459 + +0.7 4,863,460 - -1.4 4,863,463 + +1.3 4,863,463 + -0.6 4,863,463 + -0.6 4,863,463 + +0.2 4,863,464 - +0.1 4,863,464 - -0.5 4,863,505 + Echvi_4056 0.10 +1.2 4,863,621 - Echvi_4056 0.22 -1.0 4,863,702 + Echvi_4056 0.30 -0.3 4,863,703 - Echvi_4056 0.30 -1.8 4,863,751 + Echvi_4056 0.35 -2.3 4,863,766 + Echvi_4056 0.37 +0.8 4,863,772 + Echvi_4056 0.37 +0.2 4,863,773 - Echvi_4056 0.38 -1.4 4,863,773 - Echvi_4056 0.38 -0.7 4,863,809 + Echvi_4056 0.41 -0.5 4,863,810 - Echvi_4056 0.41 +0.7 4,863,810 - Echvi_4056 0.41 -3.2 4,863,818 + Echvi_4056 0.42 -0.5 4,863,819 - Echvi_4056 0.42 +1.3 4,863,824 - Echvi_4056 0.43 -1.0 4,863,853 + Echvi_4056 0.46 +0.5 4,863,855 + Echvi_4056 0.46 -0.1 4,863,865 + Echvi_4056 0.47 -0.7 4,863,866 - Echvi_4056 0.47 +0.9 4,863,883 - Echvi_4056 0.49 +0.4 4,863,920 + Echvi_4056 0.52 +0.1 4,863,920 + Echvi_4056 0.52 +0.3 4,863,952 + Echvi_4056 0.56 -2.2 4,864,043 + Echvi_4056 0.65 -0.0 4,864,044 - Echvi_4056 0.65 +0.3 4,864,075 + Echvi_4056 0.68 -0.2 4,864,075 + Echvi_4056 0.68 -1.3 4,864,075 + Echvi_4056 0.68 -1.1 4,864,096 + Echvi_4056 0.70 +1.9 4,864,097 - Echvi_4056 0.70 -0.4 4,864,176 - Echvi_4056 0.78 +0.5 4,864,228 + Echvi_4056 0.84 -1.3 4,864,228 + Echvi_4056 0.84 -0.5 4,864,308 - -1.4 4,864,331 + -2.4 4,864,379 - -1.6 4,864,412 - +0.9 4,864,446 + -1.1 4,864,518 + +1.1 4,864,574 - -0.9 4,864,686 - -0.3 4,864,771 + -0.4 4,864,772 - -2.0 4,864,772 - -2.0 4,864,777 + +0.9 4,864,777 + +0.3 4,864,807 + -1.3 4,864,808 - -1.2 4,864,827 + -0.9 4,864,870 + -1.0 4,864,870 + -0.3 4,864,939 + +0.3 4,864,945 + -0.1 4,864,965 + -0.8 4,864,966 + -1.2 4,864,966 + -0.9 4,864,967 - +0.2 4,865,024 - +0.3 4,865,086 - -1.8 4,865,156 + +0.7 4,865,214 - +0.8 4,865,237 + +0.2 4,865,250 - -1.0 4,865,250 - +0.9 4,865,276 + -0.8 4,865,312 - -0.1
Or see this region's nucleotide sequence