Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3509 and Echvi_3510 are separated by 167 nucleotides Echvi_3510 and Echvi_3511 are separated by 3 nucleotides Echvi_3511 and Echvi_3512 are separated by 97 nucleotides
Echvi_3509: Echvi_3509 - tRNA modification GTPase TrmE, at 4,158,855 to 4,160,237
_3509
Echvi_3510: Echvi_3510 - Site-specific recombinase XerD, at 4,160,405 to 4,161,547
_3510
Echvi_3511: Echvi_3511 - hypothetical protein, at 4,161,551 to 4,162,408
_3511
Echvi_3512: Echvi_3512 - DNA binding domain, excisionase family, at 4,162,506 to 4,162,784
_3512
Position (kb)
4160
4161
4162 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4159.475 kb on - strand, within Echvi_3509 at 4159.869 kb on - strand, within Echvi_3509 at 4160.288 kb on - strand at 4160.396 kb on - strand at 4160.449 kb on - strand at 4160.465 kb on + strand at 4160.465 kb on + strand at 4160.465 kb on + strand at 4160.468 kb on + strand at 4160.468 kb on + strand at 4160.470 kb on + strand at 4160.471 kb on - strand at 4160.563 kb on + strand, within Echvi_3510 at 4160.663 kb on - strand, within Echvi_3510 at 4160.663 kb on - strand, within Echvi_3510 at 4160.664 kb on + strand, within Echvi_3510 at 4160.665 kb on - strand, within Echvi_3510 at 4160.665 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.697 kb on - strand, within Echvi_3510 at 4160.739 kb on - strand, within Echvi_3510 at 4160.739 kb on - strand, within Echvi_3510 at 4160.815 kb on + strand, within Echvi_3510 at 4160.822 kb on - strand, within Echvi_3510 at 4160.822 kb on - strand, within Echvi_3510 at 4160.897 kb on + strand, within Echvi_3510 at 4160.951 kb on + strand, within Echvi_3510 at 4160.951 kb on + strand, within Echvi_3510 at 4160.952 kb on - strand, within Echvi_3510 at 4160.956 kb on - strand, within Echvi_3510 at 4160.967 kb on - strand, within Echvi_3510 at 4161.014 kb on + strand at 4161.014 kb on + strand, within Echvi_3510 at 4161.033 kb on + strand, within Echvi_3510 at 4161.058 kb on + strand, within Echvi_3510 at 4161.058 kb on + strand, within Echvi_3510 at 4161.062 kb on + strand, within Echvi_3510 at 4161.109 kb on + strand, within Echvi_3510 at 4161.109 kb on + strand, within Echvi_3510 at 4161.109 kb on + strand, within Echvi_3510 at 4161.110 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.134 kb on - strand, within Echvi_3510 at 4161.163 kb on + strand, within Echvi_3510 at 4161.212 kb on + strand, within Echvi_3510 at 4161.213 kb on - strand, within Echvi_3510 at 4161.216 kb on + strand, within Echvi_3510 at 4161.216 kb on + strand, within Echvi_3510 at 4161.217 kb on - strand, within Echvi_3510 at 4161.217 kb on - strand, within Echvi_3510 at 4161.217 kb on - strand, within Echvi_3510 at 4161.218 kb on + strand, within Echvi_3510 at 4161.281 kb on + strand, within Echvi_3510 at 4161.289 kb on + strand, within Echvi_3510 at 4161.293 kb on + strand, within Echvi_3510 at 4161.293 kb on + strand, within Echvi_3510 at 4161.294 kb on - strand, within Echvi_3510 at 4161.306 kb on - strand, within Echvi_3510 at 4161.306 kb on - strand, within Echvi_3510 at 4161.308 kb on - strand, within Echvi_3510 at 4161.310 kb on + strand, within Echvi_3510 at 4161.417 kb on + strand, within Echvi_3510 at 4161.418 kb on - strand, within Echvi_3510 at 4161.418 kb on - strand, within Echvi_3510 at 4161.438 kb on + strand at 4161.445 kb on + strand at 4161.446 kb on - strand at 4161.446 kb on - strand at 4161.446 kb on - strand at 4161.470 kb on + strand at 4161.475 kb on + strand at 4161.511 kb on + strand at 4161.512 kb on - strand at 4161.513 kb on + strand at 4161.514 kb on - strand at 4161.514 kb on - strand at 4161.531 kb on + strand at 4161.545 kb on + strand at 4161.545 kb on + strand at 4161.580 kb on - strand at 4161.597 kb on + strand at 4161.597 kb on + strand at 4161.615 kb on - strand at 4161.625 kb on - strand at 4161.628 kb on + strand at 4161.635 kb on + strand at 4161.647 kb on - strand, within Echvi_3511 at 4161.655 kb on + strand, within Echvi_3511 at 4161.656 kb on - strand, within Echvi_3511 at 4161.656 kb on - strand, within Echvi_3511 at 4161.659 kb on + strand, within Echvi_3511 at 4161.696 kb on - strand, within Echvi_3511 at 4161.701 kb on - strand, within Echvi_3511 at 4161.744 kb on - strand, within Echvi_3511 at 4161.744 kb on - strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.745 kb on + strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.746 kb on - strand, within Echvi_3511 at 4161.751 kb on + strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.887 kb on - strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.888 kb on + strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.889 kb on - strand, within Echvi_3511 at 4161.919 kb on + strand, within Echvi_3511 at 4162.009 kb on + strand, within Echvi_3511 at 4162.094 kb on + strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.181 kb on - strand, within Echvi_3511 at 4162.212 kb on - strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.235 kb on + strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.236 kb on - strand, within Echvi_3511 at 4162.243 kb on + strand, within Echvi_3511 at 4162.244 kb on - strand, within Echvi_3511 at 4162.313 kb on + strand, within Echvi_3511 at 4162.333 kb on + strand at 4162.333 kb on + strand at 4162.334 kb on - strand at 4162.334 kb on - strand at 4162.340 kb on + strand at 4162.358 kb on + strand at 4162.359 kb on - strand at 4162.359 kb on - strand at 4162.361 kb on - strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.401 kb on + strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.402 kb on - strand at 4162.467 kb on + strand at 4162.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,159,475 - Echvi_3509 0.45 +0.7 4,159,869 - Echvi_3509 0.73 -0.6 4,160,288 - -0.8 4,160,396 - +0.9 4,160,449 - -0.7 4,160,465 + -0.4 4,160,465 + -1.6 4,160,465 + +1.2 4,160,468 + +0.2 4,160,468 + -0.8 4,160,470 + -2.2 4,160,471 - -1.5 4,160,563 + Echvi_3510 0.14 +0.7 4,160,663 - Echvi_3510 0.23 +0.4 4,160,663 - Echvi_3510 0.23 -0.0 4,160,664 + Echvi_3510 0.23 -0.6 4,160,665 - Echvi_3510 0.23 +2.1 4,160,665 - Echvi_3510 0.23 -1.1 4,160,697 - Echvi_3510 0.26 -0.9 4,160,697 - Echvi_3510 0.26 -0.1 4,160,697 - Echvi_3510 0.26 +1.3 4,160,697 - Echvi_3510 0.26 -1.4 4,160,697 - Echvi_3510 0.26 +0.1 4,160,697 - Echvi_3510 0.26 -0.7 4,160,739 - Echvi_3510 0.29 -1.7 4,160,739 - Echvi_3510 0.29 -0.0 4,160,815 + Echvi_3510 0.36 +1.9 4,160,822 - Echvi_3510 0.36 -1.7 4,160,822 - Echvi_3510 0.36 -0.5 4,160,897 + Echvi_3510 0.43 -0.2 4,160,951 + Echvi_3510 0.48 +0.9 4,160,951 + Echvi_3510 0.48 +0.2 4,160,952 - Echvi_3510 0.48 +0.6 4,160,956 - Echvi_3510 0.48 -1.0 4,160,967 - Echvi_3510 0.49 -2.0 4,161,014 + +0.1 4,161,014 + Echvi_3510 0.53 +0.6 4,161,033 + Echvi_3510 0.55 +0.6 4,161,058 + Echvi_3510 0.57 +1.4 4,161,058 + Echvi_3510 0.57 +0.2 4,161,062 + Echvi_3510 0.57 -0.1 4,161,109 + Echvi_3510 0.62 -1.5 4,161,109 + Echvi_3510 0.62 -0.3 4,161,109 + Echvi_3510 0.62 -0.5 4,161,110 - Echvi_3510 0.62 -2.1 4,161,134 - Echvi_3510 0.64 +0.9 4,161,134 - Echvi_3510 0.64 -0.9 4,161,134 - Echvi_3510 0.64 -0.5 4,161,134 - Echvi_3510 0.64 -1.4 4,161,134 - Echvi_3510 0.64 +0.8 4,161,163 + Echvi_3510 0.66 -0.7 4,161,212 + Echvi_3510 0.71 +0.8 4,161,213 - Echvi_3510 0.71 -0.4 4,161,216 + Echvi_3510 0.71 +1.4 4,161,216 + Echvi_3510 0.71 -0.1 4,161,217 - Echvi_3510 0.71 -0.4 4,161,217 - Echvi_3510 0.71 -0.7 4,161,217 - Echvi_3510 0.71 +1.3 4,161,218 + Echvi_3510 0.71 +1.2 4,161,281 + Echvi_3510 0.77 +0.3 4,161,289 + Echvi_3510 0.77 -0.1 4,161,293 + Echvi_3510 0.78 -1.3 4,161,293 + Echvi_3510 0.78 -1.0 4,161,294 - Echvi_3510 0.78 +0.2 4,161,306 - Echvi_3510 0.79 -1.2 4,161,306 - Echvi_3510 0.79 -0.7 4,161,308 - Echvi_3510 0.79 -0.9 4,161,310 + Echvi_3510 0.79 +0.1 4,161,417 + Echvi_3510 0.89 -0.3 4,161,418 - Echvi_3510 0.89 +0.3 4,161,418 - Echvi_3510 0.89 -0.3 4,161,438 + +0.7 4,161,445 + -0.7 4,161,446 - +0.4 4,161,446 - -0.6 4,161,446 - -0.1 4,161,470 + -2.8 4,161,475 + -2.0 4,161,511 + +0.4 4,161,512 - -0.4 4,161,513 + +0.8 4,161,514 - -0.9 4,161,514 - -0.5 4,161,531 + +1.6 4,161,545 + +0.3 4,161,545 + -0.0 4,161,580 - -0.9 4,161,597 + -0.0 4,161,597 + -0.1 4,161,615 - +0.8 4,161,625 - +0.7 4,161,628 + +0.3 4,161,635 + -0.0 4,161,647 - Echvi_3511 0.11 -0.9 4,161,655 + Echvi_3511 0.12 -1.1 4,161,656 - Echvi_3511 0.12 -0.2 4,161,656 - Echvi_3511 0.12 +0.1 4,161,659 + Echvi_3511 0.13 -0.9 4,161,696 - Echvi_3511 0.17 -0.5 4,161,701 - Echvi_3511 0.17 -0.4 4,161,744 - Echvi_3511 0.22 -1.7 4,161,744 - Echvi_3511 0.22 +0.8 4,161,745 + Echvi_3511 0.23 +1.4 4,161,745 + Echvi_3511 0.23 -1.0 4,161,745 + Echvi_3511 0.23 -0.2 4,161,745 + Echvi_3511 0.23 -1.0 4,161,746 - Echvi_3511 0.23 -0.3 4,161,746 - Echvi_3511 0.23 +0.8 4,161,746 - Echvi_3511 0.23 +0.1 4,161,746 - Echvi_3511 0.23 -1.5 4,161,751 + Echvi_3511 0.23 +0.9 4,161,887 - Echvi_3511 0.39 -0.0 4,161,887 - Echvi_3511 0.39 -0.5 4,161,887 - Echvi_3511 0.39 -3.3 4,161,888 + Echvi_3511 0.39 -2.9 4,161,888 + Echvi_3511 0.39 +0.4 4,161,888 + Echvi_3511 0.39 +0.4 4,161,888 + Echvi_3511 0.39 -0.0 4,161,889 - Echvi_3511 0.39 -0.3 4,161,889 - Echvi_3511 0.39 -0.6 4,161,889 - Echvi_3511 0.39 +0.1 4,161,889 - Echvi_3511 0.39 -0.3 4,161,889 - Echvi_3511 0.39 -2.4 4,161,919 + Echvi_3511 0.43 -0.6 4,162,009 + Echvi_3511 0.53 -0.4 4,162,094 + Echvi_3511 0.63 +0.0 4,162,181 - Echvi_3511 0.73 +0.6 4,162,181 - Echvi_3511 0.73 -0.7 4,162,212 - Echvi_3511 0.77 -2.2 4,162,235 + Echvi_3511 0.80 -0.1 4,162,235 + Echvi_3511 0.80 -0.2 4,162,235 + Echvi_3511 0.80 -0.6 4,162,236 - Echvi_3511 0.80 -1.0 4,162,236 - Echvi_3511 0.80 +2.6 4,162,236 - Echvi_3511 0.80 -0.2 4,162,236 - Echvi_3511 0.80 +0.1 4,162,236 - Echvi_3511 0.80 +0.4 4,162,236 - Echvi_3511 0.80 +0.3 4,162,243 + Echvi_3511 0.81 -0.7 4,162,244 - Echvi_3511 0.81 -0.1 4,162,313 + Echvi_3511 0.89 +0.4 4,162,333 + +1.2 4,162,333 + -2.6 4,162,334 - -1.0 4,162,334 - -1.1 4,162,340 + +0.7 4,162,358 + +0.0 4,162,359 - -0.1 4,162,359 - -0.3 4,162,361 - +0.3 4,162,401 + -2.0 4,162,401 + -0.6 4,162,401 + -0.6 4,162,402 - -0.8 4,162,402 - +2.7 4,162,402 - +0.7 4,162,467 + -0.9 4,162,520 + +0.2
Or see this region's nucleotide sequence