Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2346

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2345 and Echvi_2346 overlap by 1 nucleotidesEchvi_2346 and Echvi_2347 are separated by 157 nucleotidesEchvi_2347 and Echvi_2348 overlap by 20 nucleotides Echvi_2345: Echvi_2345 - isochorismate synthases, at 2,783,150 to 2,784,352 _2345 Echvi_2346: Echvi_2346 - uncharacterized domain 1, at 2,784,352 to 2,784,777 _2346 Echvi_2347: Echvi_2347 - Fructose-2,6-bisphosphatase, at 2,784,935 to 2,785,567 _2347 Echvi_2348: Echvi_2348 - hypothetical protein, at 2,785,548 to 2,785,973 _2348 Position (kb) 2784 2785Strain fitness (log2 ratio) -2 -1 0 1 2at 2784.305 kb on + strandat 2784.328 kb on - strandat 2784.535 kb on - strand, within Echvi_2346at 2784.540 kb on - strand, within Echvi_2346at 2784.557 kb on - strand, within Echvi_2346at 2784.715 kb on + strand, within Echvi_2346at 2784.845 kb on + strandat 2784.846 kb on - strandat 2784.943 kb on + strandat 2784.952 kb on - strandat 2784.981 kb on - strandat 2784.982 kb on + strandat 2784.983 kb on - strandat 2785.025 kb on - strand, within Echvi_2347at 2785.073 kb on - strand, within Echvi_2347at 2785.073 kb on - strand, within Echvi_2347at 2785.079 kb on - strand, within Echvi_2347at 2785.090 kb on + strand, within Echvi_2347at 2785.097 kb on + strand, within Echvi_2347at 2785.098 kb on - strand, within Echvi_2347at 2785.098 kb on - strand, within Echvi_2347at 2785.100 kb on + strand, within Echvi_2347at 2785.101 kb on - strand, within Echvi_2347at 2785.102 kb on + strand, within Echvi_2347at 2785.102 kb on + strand, within Echvi_2347at 2785.102 kb on + strand, within Echvi_2347at 2785.117 kb on + strand, within Echvi_2347at 2785.118 kb on - strand, within Echvi_2347at 2785.160 kb on + strand, within Echvi_2347at 2785.161 kb on - strand, within Echvi_2347at 2785.223 kb on - strand, within Echvi_2347at 2785.238 kb on + strand, within Echvi_2347at 2785.238 kb on + strand, within Echvi_2347at 2785.238 kb on + strand, within Echvi_2347at 2785.239 kb on - strand, within Echvi_2347at 2785.319 kb on + strand, within Echvi_2347at 2785.348 kb on + strand, within Echvi_2347at 2785.349 kb on - strand, within Echvi_2347at 2785.349 kb on - strand, within Echvi_2347at 2785.414 kb on + strand, within Echvi_2347at 2785.414 kb on + strand, within Echvi_2347at 2785.415 kb on - strand, within Echvi_2347at 2785.415 kb on - strand, within Echvi_2347at 2785.415 kb on - strand, within Echvi_2347at 2785.419 kb on + strand, within Echvi_2347at 2785.465 kb on + strand, within Echvi_2347at 2785.465 kb on + strand, within Echvi_2347at 2785.465 kb on + strand, within Echvi_2347at 2785.466 kb on - strand, within Echvi_2347at 2785.475 kb on + strand, within Echvi_2347at 2785.478 kb on + strand, within Echvi_2347at 2785.478 kb on + strand, within Echvi_2347at 2785.478 kb on + strand, within Echvi_2347at 2785.478 kb on + strand, within Echvi_2347at 2785.512 kb on + strandat 2785.524 kb on - strandat 2785.572 kb on - strandat 2785.577 kb on + strandat 2785.578 kb on - strandat 2785.627 kb on - strand, within Echvi_2348at 2785.656 kb on + strand, within Echvi_2348at 2785.678 kb on - strand, within Echvi_2348at 2785.678 kb on - strand, within Echvi_2348at 2785.772 kb on - strand, within Echvi_2348at 2785.772 kb on - strand, within Echvi_2348

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,784,305 + -1.2
2,784,328 - -0.4
2,784,535 - Echvi_2346 0.43 -0.2
2,784,540 - Echvi_2346 0.44 -1.8
2,784,557 - Echvi_2346 0.48 -2.1
2,784,715 + Echvi_2346 0.85 -1.5
2,784,845 + +0.8
2,784,846 - +1.0
2,784,943 + -0.2
2,784,952 - +1.0
2,784,981 - +0.3
2,784,982 + +1.2
2,784,983 - +0.7
2,785,025 - Echvi_2347 0.14 -0.7
2,785,073 - Echvi_2347 0.22 -0.1
2,785,073 - Echvi_2347 0.22 +0.2
2,785,079 - Echvi_2347 0.23 +1.1
2,785,090 + Echvi_2347 0.24 +0.1
2,785,097 + Echvi_2347 0.26 +1.4
2,785,098 - Echvi_2347 0.26 +0.9
2,785,098 - Echvi_2347 0.26 +1.1
2,785,100 + Echvi_2347 0.26 +0.6
2,785,101 - Echvi_2347 0.26 -1.4
2,785,102 + Echvi_2347 0.26 -1.0
2,785,102 + Echvi_2347 0.26 +0.4
2,785,102 + Echvi_2347 0.26 +2.7
2,785,117 + Echvi_2347 0.29 -0.2
2,785,118 - Echvi_2347 0.29 +0.2
2,785,160 + Echvi_2347 0.36 +0.5
2,785,161 - Echvi_2347 0.36 +0.2
2,785,223 - Echvi_2347 0.45 -0.2
2,785,238 + Echvi_2347 0.48 +0.2
2,785,238 + Echvi_2347 0.48 +1.0
2,785,238 + Echvi_2347 0.48 +1.2
2,785,239 - Echvi_2347 0.48 -0.7
2,785,319 + Echvi_2347 0.61 +2.0
2,785,348 + Echvi_2347 0.65 +1.0
2,785,349 - Echvi_2347 0.65 -0.3
2,785,349 - Echvi_2347 0.65 -0.1
2,785,414 + Echvi_2347 0.76 -1.6
2,785,414 + Echvi_2347 0.76 -0.6
2,785,415 - Echvi_2347 0.76 -0.3
2,785,415 - Echvi_2347 0.76 +1.8
2,785,415 - Echvi_2347 0.76 -0.2
2,785,419 + Echvi_2347 0.76 -0.1
2,785,465 + Echvi_2347 0.84 +0.3
2,785,465 + Echvi_2347 0.84 -0.5
2,785,465 + Echvi_2347 0.84 +2.2
2,785,466 - Echvi_2347 0.84 +0.6
2,785,475 + Echvi_2347 0.85 +0.3
2,785,478 + Echvi_2347 0.86 -2.0
2,785,478 + Echvi_2347 0.86 -0.8
2,785,478 + Echvi_2347 0.86 -1.4
2,785,478 + Echvi_2347 0.86 -0.7
2,785,512 + +0.1
2,785,524 - -2.4
2,785,572 - -0.8
2,785,577 + +0.1
2,785,578 - +0.9
2,785,627 - Echvi_2348 0.19 -0.2
2,785,656 + Echvi_2348 0.25 -0.3
2,785,678 - Echvi_2348 0.31 +1.0
2,785,678 - Echvi_2348 0.31 +1.1
2,785,772 - Echvi_2348 0.53 +2.0
2,785,772 - Echvi_2348 0.53 +0.2

Or see this region's nucleotide sequence