Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2027

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2025 and Echvi_2026 are separated by 7 nucleotidesEchvi_2026 and Echvi_2027 are separated by 4 nucleotidesEchvi_2027 and Echvi_2028 are separated by 133 nucleotides Echvi_2025: Echvi_2025 - Uncharacterized protein conserved in bacteria, at 2,386,207 to 2,387,754 _2025 Echvi_2026: Echvi_2026 - N-acetylmuramic acid 6-phosphate etherase, at 2,387,762 to 2,388,586 _2026 Echvi_2027: Echvi_2027 - Predicted N-acetylglucosamine kinase, at 2,388,591 to 2,389,451 _2027 Echvi_2028: Echvi_2028 - Negative regulator of beta-lactamase expression, at 2,389,585 to 2,390,481 _2028 Position (kb) 2388 2389 2390Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2387.726 kb on - strandat 2387.775 kb on + strandat 2387.783 kb on + strandat 2387.783 kb on + strandat 2387.908 kb on + strand, within Echvi_2026at 2387.909 kb on - strand, within Echvi_2026at 2387.945 kb on - strand, within Echvi_2026at 2387.945 kb on - strand, within Echvi_2026at 2387.959 kb on + strand, within Echvi_2026at 2388.111 kb on - strand, within Echvi_2026at 2388.134 kb on + strand, within Echvi_2026at 2388.135 kb on - strand, within Echvi_2026at 2388.135 kb on - strand, within Echvi_2026at 2388.135 kb on - strand, within Echvi_2026at 2388.150 kb on + strand, within Echvi_2026at 2388.150 kb on + strand, within Echvi_2026at 2388.150 kb on + strand, within Echvi_2026at 2388.150 kb on + strand, within Echvi_2026at 2388.293 kb on - strand, within Echvi_2026at 2388.293 kb on - strand, within Echvi_2026at 2388.387 kb on + strand, within Echvi_2026at 2388.592 kb on + strandat 2388.593 kb on - strandat 2388.596 kb on + strandat 2388.614 kb on + strandat 2388.642 kb on - strandat 2388.652 kb on - strandat 2388.669 kb on + strandat 2388.670 kb on - strandat 2388.689 kb on + strand, within Echvi_2027at 2388.689 kb on + strand, within Echvi_2027at 2388.690 kb on - strand, within Echvi_2027at 2388.690 kb on - strand, within Echvi_2027at 2388.690 kb on - strand, within Echvi_2027at 2388.716 kb on - strand, within Echvi_2027at 2388.738 kb on - strand, within Echvi_2027at 2388.738 kb on - strand, within Echvi_2027at 2388.774 kb on + strand, within Echvi_2027at 2388.774 kb on + strand, within Echvi_2027at 2388.774 kb on + strand, within Echvi_2027at 2388.775 kb on - strand, within Echvi_2027at 2388.775 kb on - strand, within Echvi_2027at 2388.775 kb on - strand, within Echvi_2027at 2388.778 kb on + strand, within Echvi_2027at 2388.778 kb on + strand, within Echvi_2027at 2388.778 kb on + strand, within Echvi_2027at 2388.778 kb on + strand, within Echvi_2027at 2388.779 kb on - strand, within Echvi_2027at 2388.779 kb on - strand, within Echvi_2027at 2388.779 kb on - strand, within Echvi_2027at 2388.842 kb on - strand, within Echvi_2027at 2388.842 kb on - strand, within Echvi_2027at 2388.842 kb on - strand, within Echvi_2027at 2388.893 kb on + strand, within Echvi_2027at 2388.893 kb on + strand, within Echvi_2027at 2388.893 kb on + strand, within Echvi_2027at 2388.894 kb on - strand, within Echvi_2027at 2388.897 kb on - strand, within Echvi_2027at 2388.939 kb on - strand, within Echvi_2027at 2389.040 kb on + strand, within Echvi_2027at 2389.040 kb on + strand, within Echvi_2027at 2389.041 kb on - strand, within Echvi_2027at 2389.042 kb on + strand, within Echvi_2027at 2389.042 kb on + strand, within Echvi_2027at 2389.065 kb on + strand, within Echvi_2027at 2389.066 kb on - strand, within Echvi_2027at 2389.066 kb on - strand, within Echvi_2027at 2389.097 kb on + strand, within Echvi_2027at 2389.097 kb on + strand, within Echvi_2027at 2389.098 kb on - strand, within Echvi_2027at 2389.115 kb on + strand, within Echvi_2027at 2389.116 kb on - strand, within Echvi_2027at 2389.174 kb on + strand, within Echvi_2027at 2389.174 kb on + strand, within Echvi_2027at 2389.175 kb on - strand, within Echvi_2027at 2389.177 kb on - strand, within Echvi_2027at 2389.224 kb on + strand, within Echvi_2027at 2389.422 kb on - strandat 2389.451 kb on + strandat 2389.451 kb on + strandat 2389.451 kb on + strandat 2389.452 kb on - strandat 2389.586 kb on + strandat 2389.608 kb on + strandat 2389.609 kb on - strandat 2389.617 kb on + strandat 2389.617 kb on + strandat 2389.617 kb on + strandat 2389.617 kb on + strandat 2389.617 kb on + strandat 2389.618 kb on - strandat 2389.618 kb on - strandat 2389.618 kb on - strandat 2389.618 kb on - strandat 2389.618 kb on - strandat 2389.713 kb on - strand, within Echvi_2028at 2389.785 kb on + strand, within Echvi_2028at 2389.838 kb on + strand, within Echvi_2028at 2389.838 kb on + strand, within Echvi_2028at 2389.838 kb on + strand, within Echvi_2028at 2389.838 kb on + strand, within Echvi_2028at 2389.838 kb on + strand, within Echvi_2028at 2389.839 kb on - strand, within Echvi_2028at 2389.843 kb on + strand, within Echvi_2028at 2389.844 kb on - strand, within Echvi_2028at 2389.844 kb on - strand, within Echvi_2028at 2389.951 kb on - strand, within Echvi_2028at 2389.956 kb on - strand, within Echvi_2028at 2389.956 kb on - strand, within Echvi_2028at 2389.987 kb on + strand, within Echvi_2028at 2390.114 kb on + strand, within Echvi_2028at 2390.115 kb on - strand, within Echvi_2028at 2390.115 kb on - strand, within Echvi_2028at 2390.115 kb on - strand, within Echvi_2028at 2390.139 kb on + strand, within Echvi_2028at 2390.159 kb on + strand, within Echvi_2028at 2390.159 kb on + strand, within Echvi_2028at 2390.196 kb on + strand, within Echvi_2028at 2390.197 kb on - strand, within Echvi_2028at 2390.197 kb on - strand, within Echvi_2028at 2390.429 kb on - strandat 2390.443 kb on - strandat 2390.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,387,726 - -0.3
2,387,775 + -0.0
2,387,783 + -0.5
2,387,783 + -0.7
2,387,908 + Echvi_2026 0.18 -0.4
2,387,909 - Echvi_2026 0.18 -0.2
2,387,945 - Echvi_2026 0.22 +0.6
2,387,945 - Echvi_2026 0.22 -1.3
2,387,959 + Echvi_2026 0.24 -1.4
2,388,111 - Echvi_2026 0.42 -0.5
2,388,134 + Echvi_2026 0.45 -1.3
2,388,135 - Echvi_2026 0.45 -0.8
2,388,135 - Echvi_2026 0.45 -0.1
2,388,135 - Echvi_2026 0.45 -0.5
2,388,150 + Echvi_2026 0.47 -0.4
2,388,150 + Echvi_2026 0.47 -1.2
2,388,150 + Echvi_2026 0.47 -0.2
2,388,150 + Echvi_2026 0.47 -2.1
2,388,293 - Echvi_2026 0.64 +0.2
2,388,293 - Echvi_2026 0.64 +1.7
2,388,387 + Echvi_2026 0.76 +1.7
2,388,592 + +0.4
2,388,593 - -1.3
2,388,596 + +1.1
2,388,614 + -1.2
2,388,642 - -0.6
2,388,652 - +1.4
2,388,669 + -0.4
2,388,670 - -0.1
2,388,689 + Echvi_2027 0.11 +0.6
2,388,689 + Echvi_2027 0.11 +0.6
2,388,690 - Echvi_2027 0.11 +0.1
2,388,690 - Echvi_2027 0.11 +1.0
2,388,690 - Echvi_2027 0.11 -0.6
2,388,716 - Echvi_2027 0.15 +1.4
2,388,738 - Echvi_2027 0.17 +0.8
2,388,738 - Echvi_2027 0.17 +1.1
2,388,774 + Echvi_2027 0.21 -0.3
2,388,774 + Echvi_2027 0.21 -0.1
2,388,774 + Echvi_2027 0.21 +0.9
2,388,775 - Echvi_2027 0.21 -0.6
2,388,775 - Echvi_2027 0.21 +1.0
2,388,775 - Echvi_2027 0.21 +1.2
2,388,778 + Echvi_2027 0.22 +0.5
2,388,778 + Echvi_2027 0.22 -0.0
2,388,778 + Echvi_2027 0.22 -2.6
2,388,778 + Echvi_2027 0.22 +0.5
2,388,779 - Echvi_2027 0.22 -1.0
2,388,779 - Echvi_2027 0.22 -0.9
2,388,779 - Echvi_2027 0.22 +2.0
2,388,842 - Echvi_2027 0.29 +0.5
2,388,842 - Echvi_2027 0.29 +0.4
2,388,842 - Echvi_2027 0.29 -0.8
2,388,893 + Echvi_2027 0.35 +0.4
2,388,893 + Echvi_2027 0.35 -1.1
2,388,893 + Echvi_2027 0.35 -0.8
2,388,894 - Echvi_2027 0.35 +2.0
2,388,897 - Echvi_2027 0.36 +0.4
2,388,939 - Echvi_2027 0.40 +1.0
2,389,040 + Echvi_2027 0.52 -1.1
2,389,040 + Echvi_2027 0.52 -1.3
2,389,041 - Echvi_2027 0.52 +0.9
2,389,042 + Echvi_2027 0.52 -0.0
2,389,042 + Echvi_2027 0.52 -0.1
2,389,065 + Echvi_2027 0.55 +0.1
2,389,066 - Echvi_2027 0.55 +0.2
2,389,066 - Echvi_2027 0.55 -1.6
2,389,097 + Echvi_2027 0.59 +0.8
2,389,097 + Echvi_2027 0.59 -1.2
2,389,098 - Echvi_2027 0.59 +0.2
2,389,115 + Echvi_2027 0.61 +1.0
2,389,116 - Echvi_2027 0.61 +1.0
2,389,174 + Echvi_2027 0.68 +0.3
2,389,174 + Echvi_2027 0.68 +0.8
2,389,175 - Echvi_2027 0.68 +0.7
2,389,177 - Echvi_2027 0.68 +1.0
2,389,224 + Echvi_2027 0.74 +1.2
2,389,422 - +0.8
2,389,451 + -0.5
2,389,451 + +0.9
2,389,451 + +0.4
2,389,452 - +0.8
2,389,586 + -1.6
2,389,608 + -0.1
2,389,609 - +0.8
2,389,617 + -1.3
2,389,617 + -1.8
2,389,617 + -1.6
2,389,617 + -1.0
2,389,617 + -1.2
2,389,618 - -1.0
2,389,618 - -1.2
2,389,618 - -1.0
2,389,618 - +0.9
2,389,618 - +1.2
2,389,713 - Echvi_2028 0.14 -2.0
2,389,785 + Echvi_2028 0.22 -1.0
2,389,838 + Echvi_2028 0.28 +0.6
2,389,838 + Echvi_2028 0.28 +0.4
2,389,838 + Echvi_2028 0.28 +0.8
2,389,838 + Echvi_2028 0.28 -0.6
2,389,838 + Echvi_2028 0.28 -0.7
2,389,839 - Echvi_2028 0.28 -0.5
2,389,843 + Echvi_2028 0.29 -1.6
2,389,844 - Echvi_2028 0.29 +0.3
2,389,844 - Echvi_2028 0.29 -0.1
2,389,951 - Echvi_2028 0.41 -0.8
2,389,956 - Echvi_2028 0.41 -1.0
2,389,956 - Echvi_2028 0.41 +0.5
2,389,987 + Echvi_2028 0.45 +0.5
2,390,114 + Echvi_2028 0.59 +2.0
2,390,115 - Echvi_2028 0.59 -1.2
2,390,115 - Echvi_2028 0.59 -1.3
2,390,115 - Echvi_2028 0.59 +0.1
2,390,139 + Echvi_2028 0.62 +0.2
2,390,159 + Echvi_2028 0.64 +1.1
2,390,159 + Echvi_2028 0.64 -0.5
2,390,196 + Echvi_2028 0.68 -1.0
2,390,197 - Echvi_2028 0.68 -1.1
2,390,197 - Echvi_2028 0.68 +1.1
2,390,429 - -1.2
2,390,443 - -3.6
2,390,447 - -0.2

Or see this region's nucleotide sequence